[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6346	8027920	NM_014209	ETV2		ets variant 2

Fetching correlation data, please wait...
Getting list of correlations for id 6346.
Getting list of p-values for id 6346.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.152 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8027920	7955305	NM_001652	AQP6	0.798409	1.981275e-24	3.432955e-20	3.432955e-20
2	8027920	8007259	ENST00000225928		0.790340	1.197855e-23	2.075524e-19	1.037762e-19
3	8027920	8153101	NM_152888	COL22A1	0.781604	7.704218e-23	1.334910e-18	4.449699e-19
4	8027920	8074131	NM_001080420	SHANK3	0.776059	2.403522e-22	4.164583e-18	1.041146e-18
5	8027920	7921936	NM_177398	LMX1A	0.775031	2.957319e-22	5.124146e-18	1.024829e-18
6	8027920	8060609	ENST00000410721		0.771776	5.660939e-22	9.808710e-18	1.634785e-18
7	8027920	8163599	NM_015404	DFNB31	0.770642	7.080626e-22	1.226860e-17	1.752657e-18
8	8027920	7985030	ENST00000428357		0.770339	7.515002e-22	1.302124e-17	1.627655e-18
9	8027920	8110821	NM_001044	SLC6A3	0.767308	1.356556e-21	2.350505e-17	2.611673e-18
10	8027920	7998015	NM_032451	SPIRE2	0.766500	1.585774e-21	2.747671e-17	2.747671e-18
11	8027920	8049670	NM_002081	GPC1	0.765976	1.754053e-21	3.039247e-17	2.762952e-18
12	8027920	8068496	NM_009586	SIM2	0.763814	2.651513e-21	4.594277e-17	3.828564e-18
13	8027920	8028407	NM_000540	RYR1	0.763475	2.827879e-21	4.899866e-17	3.769128e-18
14	8027920	8125568	NM_080680	COL11A2	0.763043	3.069186e-21	5.317979e-17	3.798556e-18
15	8027920	7945688	NR_003512	INS-IGF2	0.762846	3.185869e-21	5.520155e-17	3.680103e-18
16	8027920	7922590	AK125993	NCRNA00083	0.761109	4.419310e-21	7.657339e-17	4.785837e-18
17	8027920	8131056	NM_017781	CYP2W1	0.760876	4.616639e-21	7.999251e-17	4.705442e-18
18	8027920	8075126	NM_002430	MN1	0.760187	5.251980e-21	9.100105e-17	5.055614e-18
19	8027920	8151609	NM_172239	REXO1L1	0.759377	6.107854e-21	1.058308e-16	5.570042e-18
20	8027920	8142971	NM_138693	KLF14	0.759073	6.462275e-21	1.119718e-16	5.598592e-18
21	8027920	8093807	NM_173660	DOK7	0.758920	6.649215e-21	1.152109e-16	5.486236e-18
22	8027920	7914361	NM_001856	COL16A1	0.758168	7.642643e-21	1.324241e-16	6.019276e-18
23	8027920	8125234	NM_019105	TNXB	0.757464	8.703560e-21	1.508066e-16	6.556808e-18
24	8027920	8018220	NM_000835	GRIN2C	0.756363	1.065612e-20	1.846385e-16	7.693272e-18
25	8027920	8032312	NM_138813	ATP8B3	0.755711	1.200650e-20	2.080366e-16	8.321465e-18
26	8027920	8164077	NM_004959	NR5A1	0.755118	1.337916e-20	2.318207e-16	8.916180e-18
27	8027920	8137330	ENST00000356058		0.754882	1.396683e-20	2.420033e-16	8.963085e-18
28	8027920	8016646	NM_000088	COL1A1	0.754714	1.440125e-20	2.495304e-16	8.911802e-18
29	8027920	7913450	NM_005529	HSPG2	0.754586	1.474058e-20	2.554100e-16	8.807240e-18
30	8027920	7973745	NM_005249	FOXG1	0.753554	1.777207e-20	3.079367e-16	1.026456e-17
31	8027920	7937560	NM_002457	MUC2	0.753087	1.933756e-20	3.350619e-16	1.080845e-17
32	8027920	7973468	NM_138360	LRRC16B	0.751724	2.471077e-20	4.281635e-16	1.338011e-17
33	8027920	8087907	NM_020163	SEMA3G	0.751646	2.506162e-20	4.342427e-16	1.315887e-17
34	8027920	8039362	NM_178837	C19orf51	0.751121	2.752977e-20	4.770083e-16	1.402966e-17
35	8027920	7968265	NM_000209	PDX1	0.751009	2.808709e-20	4.866650e-16	1.390471e-17
36	8027920	8037513	NM_138568	EXOC3L2	0.750453	3.101616e-20	5.374170e-16	1.492825e-17
37	8027920	7911435	NM_001014980	FAM132A	0.749978	3.375220e-20	5.848244e-16	1.580606e-17
38	8027920	7912591	NM_001012277	PRAMEF7	0.749960	3.386155e-20	5.867191e-16	1.543998e-17
39	8027920	7912606	NM_001012277	PRAMEF7	0.749960	3.386155e-20	5.867191e-16	1.504408e-17
40	8027920	7897991	NM_001012277	PRAMEF7	0.749960	3.386155e-20	5.867191e-16	1.466798e-17
41	8027920	7996027	NM_002996	CX3CL1	0.749944	3.396065e-20	5.884362e-16	1.435210e-17
42	8027920	8036072	NM_207392	KRTDAP	0.749687	3.554584e-20	6.159028e-16	1.466435e-17
43	8027920	8004842	NM_173728	ARHGEF15	0.749423	3.725223e-20	6.454694e-16	1.501092e-17
44	8027920	8086391	NM_000729	CCK	0.749325	3.789957e-20	6.566858e-16	1.492468e-17
45	8027920	8125383	NM_004557	NOTCH4	0.749242	3.846308e-20	6.664497e-16	1.480999e-17
46	8027920	7906307	NM_018240	KIRREL	0.748642	4.277072e-20	7.410883e-16	1.611061e-17
47	8027920	8107897	NM_003687	PDLIM4	0.747719	5.033789e-20	8.722047e-16	1.855755e-17
48	8027920	7972291	NM_007084	SOX21	0.747670	5.076661e-20	8.796331e-16	1.832569e-17
49	8027920	7981447	NM_001100119	XRCC3	0.747106	5.606378e-20	9.714171e-16	1.982484e-17
50	8027920	8159531	NM_207510	LCNL1	0.746969	5.742395e-20	9.949848e-16	1.989970e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation