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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
4141 8039859 NM_002255 KIR2DL4 link to infopage killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4
4234 8031346 NM_002255 KIR2DL4 link to infopage killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4

Fetching correlation data, please wait...
Getting list of correlations for id 4141.
Getting list of p-values for id 4141.
1 of 2 done.
Getting list of correlations for id 4234.
Getting list of p-values for id 4234.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8031346 8039859 NM_002255 KIR2DL4 link to infopage 0.992308 2.798418e-95 9.697637e-91 9.697637e-91
2 8039859 8031346 NM_002255 KIR2DL4 link to infopage 0.992308 2.798418e-95 9.697637e-91 4.848818e-91
3 8031346 8031260 NM_153443 KIR3DL3 link to infopage 0.854373 4.790226e-31 1.660005e-26 5.533350e-27
4 8039859 8031297 NM_014218 KIR2DL1 link to infopage 0.853222 6.968342e-31 2.414809e-26 6.037023e-27
5 8039859 8031260 NM_153443 KIR3DL3 link to infopage 0.848156 3.494189e-30 1.210876e-25 2.421752e-26
6 8039859 8031277 NM_015868 KIR2DL3 link to infopage 0.840893 3.191448e-29 1.105964e-24 1.843274e-25
7 8031346 8031297 NM_014218 KIR2DL1 link to infopage 0.840097 4.039660e-29 1.399904e-24 1.999862e-25
8 8039859 8039829 NM_014219 KIR2DL2 link to infopage 0.836583 1.126144e-28 3.902538e-24 4.878172e-25
9 8031346 8031277 NM_015868 KIR2DL3 link to infopage 0.834304 2.161188e-28 7.489382e-24 8.321535e-25
10 8031346 8039829 NM_014219 KIR2DL2 link to infopage 0.827044 1.617373e-27 5.604845e-23 5.604845e-24
11 8031346 8031311 NM_013289 KIR3DL1 link to infopage 0.826069 2.104019e-27 7.291269e-23 6.628426e-24
12 8039859 8031311 NM_013289 KIR3DL1 link to infopage 0.823513 4.162527e-27 1.442482e-22 1.202068e-23
13 8039859 8031293 NM_014511 KIR2DL3 link to infopage 0.813311 5.702631e-26 1.976190e-21 1.520146e-22
14 8031346 8031293 NM_014511 KIR2DL3 link to infopage 0.808495 1.856702e-25 6.434214e-21 4.595867e-22
15 8039859 8031328 NM_006737 KIR3DL2 link to infopage 0.806679 2.872996e-25 9.956081e-21 6.637388e-22
16 8031346 8031328 NM_006737 KIR3DL2 link to infopage 0.801413 9.927976e-25 3.440441e-20 2.150275e-21
17 8031346 8039820 NM_153443 KIR3DL3 link to infopage 0.798936 1.756665e-24 6.087547e-20 3.580910e-21
18 8039859 8039896 NM_014512 KIR2DS1 link to infopage 0.797217 2.597659e-24 9.001927e-20 5.001071e-21
19 8039859 8039820 NM_153443 KIR3DL3 link to infopage 0.793498 5.980437e-24 2.072461e-19 1.090769e-20
20 8031346 8039896 NM_014512 KIR2DS1 link to infopage 0.792324 7.754047e-24 2.687087e-19 1.343544e-20
21 8039859 8039842 NM_012312 KIR2DS2 link to infopage 0.778637 1.421867e-22 4.927339e-18 2.346352e-19
22 8039859 8031358 NM_012314 KIR2DS4 link to infopage 0.772521 4.883964e-22 1.692489e-17 7.693132e-19
23 8031346 8031358 NM_012314 KIR2DS4 link to infopage 0.769029 9.710870e-22 3.365205e-17 1.463133e-18
24 8031346 8039842 NM_012312 KIR2DS2 link to infopage 0.768910 9.939344e-22 3.444380e-17 1.435158e-18
25 8031346 8039871 NM_001083539 KIR3DS1 link to infopage 0.754793 1.419409e-20 4.918819e-16 1.967528e-17
26 8039859 8039871 NM_001083539 KIR3DS1 link to infopage 0.754601 1.469907e-20 5.093816e-16 1.959160e-17
27 8039859 8031387 NM_004829 NCR1 link to infopage 0.555797 7.529562e-10 2.609294e-5 9.664053e-7
28 8031346 8031387 NM_004829 NCR1 link to infopage 0.549180 1.309293e-9 4.537223e-5 1.620437e-6
29 8039859 7934161 NM_005041 PRF1 link to infopage 0.530795 5.727295e-9 1.984737e-4 6.843920e-6
30 8031346 7934161 NM_005041 PRF1 link to infopage 0.512886 2.220840e-8 7.696098e-4 2.565366e-5
31 8039859 7943892 NM_181351 NCAM1 link to infopage 0.496954 6.955830e-8 2.410473e-3 7.775720e-5
32 8031346 7943892 NM_181351 NCAM1 link to infopage 0.493196 9.030006e-8 3.129258e-3 9.778932e-5
33 8039859 8066641 NM_022095 ZNF335 link to infopage 0.480733 2.098453e-7 7.271978e-3 2.203630e-4
34 8039859 8059720 NM_006056 NMUR1 link to infopage 0.471912 3.736612e-7 1.294885e-2 3.808487e-4
35 8031346 8066641 NM_022095 ZNF335 link to infopage 0.466283 5.354776e-7 1.855644e-2 5.301840e-4
36 8039859 7921900 NM_053282 SH2D1B link to infopage 0.464571 5.966521e-7 2.067638e-2 5.743440e-4
37 8031346 7907430 NM_000639 FASLG link to infopage 0.464152 6.125914e-7 2.122874e-2 5.737498e-4
38 8039859 7907430 NM_000639 FASLG link to infopage 0.462866 6.641268e-7 2.301465e-2 6.056487e-4
39 8031346 8059720 NM_006056 NMUR1 link to infopage 0.461131 7.401950e-7 2.565072e-2 6.577107e-4
40 8031346 7996081 NM_201524 GPR56 link to infopage 0.458722 8.596032e-7 2.978869e-2 7.447172e-4
41 8039859 8131140 AK024457 LOC100288594 link to infopage 0.458693 8.611308e-7 2.984163e-2 7.278446e-4
42 8039859 7996081 NM_201524 GPR56 link to infopage 0.455518 1.046944e-6 3.628081e-2 8.638289e-4
43 8031346 7921900 NM_053282 SH2D1B link to infopage 0.453429 1.189329e-6 4.121502e-2 9.584888e-4
44 8031346 8041447 NM_016441 CRIM1 link to infopage 0.452265 1.276347e-6 4.423052e-2 1.005239e-3
45 8031346 8131140 AK024457 LOC100288594 link to infopage 0.452029 1.294764e-6 4.486877e-2 9.970837e-4
46 8039859 7923233 NM_017596 KIF21B link to infopage 0.451980 1.298602e-6 4.500177e-2 9.782993e-4
47 8039859 8075886 NM_000878 IL2RB link to infopage 0.451925 1.302974e-6 4.515325e-2 9.607074e-4
48 8039859 8041447 NM_016441 CRIM1 link to infopage 0.451775 1.314798e-6 4.556302e-2 9.492296e-4
49 8039859 7994826 NM_002209 ITGAL link to infopage 0.449709 1.489253e-6 5.160856e-2 1.053236e-3
50 8039859 7956524 NM_024779 PIP4K2C link to infopage 0.448492 1.602100e-6 5.551917e-2 1.110383e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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