[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2139	7961175	NM_002261	KLRC3		killer cell lectin-like receptor subfamily C, member 3

Fetching correlation data, please wait...
Getting list of correlations for id 2139.
Getting list of p-values for id 2139.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.254 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7961175	7961166	NM_013431	KLRC4	0.759010	6.538643e-21	1.132951e-16	1.132951e-16
2	7961175	7953949	NM_002262	KLRD1	0.674065	3.246904e-15	5.625911e-11	2.812956e-11
3	7961175	8021181	NR_003003	SCARNA17	0.670035	5.431165e-15	9.410579e-11	3.136860e-11
4	7961175	8057771	NM_003151	STAT4	0.652402	4.709242e-14	8.159704e-10	2.039926e-10
5	7961175	7906386	NM_152501	PYHIN1	0.647357	8.513596e-14	1.475151e-9	2.950302e-10
6	7961175	7934161	NM_005041	PRF1	0.630117	5.937102e-13	1.028722e-8	1.714536e-9
7	7961175	7974835	NM_006255	PRKCH	0.630061	5.973543e-13	1.035036e-8	1.478623e-9
8	7961175	7917649	NM_003243	TGFBR3	0.628603	7.000643e-13	1.213001e-8	1.516252e-9
9	7961175	8129482	NM_001017373	SAMD3	0.626802	8.506561e-13	1.473932e-8	1.637702e-9
10	7961175	8014248	NM_144682	SLFN13	0.625892	9.382629e-13	1.625728e-8	1.625728e-9
11	7961175	7961151	NM_007360	KLRK1	0.619846	1.784755e-12	3.092446e-8	2.811314e-9
12	7961175	8156026	NM_001098802	CEP78	0.614536	3.104443e-12	5.379069e-8	4.482557e-9
13	7961175	7953892	NM_016523	KLRF1	0.607608	6.293923e-12	1.090548e-7	8.388832e-9
14	7961175	7951752	NM_020886	USP28	0.605763	7.575439e-12	1.312596e-7	9.375688e-9
15	7961175	7922040	NM_198053	CD247	0.603276	9.706514e-12	1.681848e-7	1.121232e-8
16	7961175	8038809	NM_005601	NKG7	0.600641	1.259361e-11	2.182096e-7	1.363810e-8
17	7961175	8151101	NM_001080416	MYBL1	0.598726	1.519422e-11	2.632702e-7	1.548648e-8
18	7961175	8075182	NM_005080	XBP1	0.598537	1.547757e-11	2.681798e-7	1.489888e-8
19	7961175	7961173	AF461811		0.595532	2.072568e-11	3.591138e-7	1.890073e-8
20	7961175	7965812	NM_024312	GNPTAB	0.588568	4.030277e-11	6.983261e-7	3.491630e-8
21	7961175	8123062	NM_020823	TMEM181	0.586688	4.810012e-11	8.334307e-7	3.968718e-8
22	7961175	8021183	NR_003003	SCARNA17	0.585269	5.492703e-11	9.517207e-7	4.326003e-8
23	7961175	7978366	NM_004131	GZMB	0.583728	6.339743e-11	1.098487e-6	4.776032e-8
24	7961175	7921677	NM_016382	CD244	0.583099	6.720488e-11	1.164459e-6	4.851913e-8
25	7961175	8128956	NM_002037	FYN	0.582697	6.975220e-11	1.208596e-6	4.834385e-8
26	7961175	7923812	NM_003929	RAB7L1	0.579855	9.061178e-11	1.570030e-6	6.038578e-8
27	7961175	8130211	NM_182961	SYNE1	0.578540	1.021818e-10	1.770504e-6	6.557423e-8
28	7961175	8099471	NM_031950	FGFBP2	0.578174	1.056490e-10	1.830581e-6	6.537788e-8
29	7961175	8115895	NM_020444	KIAA1191	0.577808	1.092313e-10	1.892651e-6	6.526383e-8
30	7961175	8020806	NM_017831	RNF125	0.576936	1.182357e-10	2.048669e-6	6.828898e-8
31	7961175	7906613	NM_021181	SLAMF7	0.576483	1.231933e-10	2.134570e-6	6.885710e-8
32	7961175	8086344	NM_001337	CX3CR1	0.576408	1.240269e-10	2.149015e-6	6.715672e-8
33	7961175	7939383	NM_024841	PRR5L	0.575004	1.407987e-10	2.439618e-6	7.392783e-8
34	7961175	7974363	NM_000953	PTGDR	0.572300	1.794598e-10	3.109501e-6	9.145590e-8
35	7961175	8019651	NM_001001435	CCL4L1	0.570244	2.155009e-10	3.733985e-6	1.066853e-7
36	7961175	8006621	NM_001001435	CCL4L1	0.570244	2.155009e-10	3.733985e-6	1.037218e-7
37	7961175	7961059	NM_002258	KLRB1	0.567859	2.660409e-10	4.609690e-6	1.245862e-7
38	7961175	8056545	NM_013233	STK39	0.567743	2.687753e-10	4.657069e-6	1.225545e-7
39	7961175	8044849	NM_002830	PTPN4	0.565662	3.225481e-10	5.588791e-6	1.433023e-7
40	7961175	7976863	NM_001161725	PPP2R5C	0.564482	3.575004e-10	6.194409e-6	1.548602e-7
41	7961175	8139100	M30894	TARP	0.563233	3.984495e-10	6.903934e-6	1.683886e-7
42	7961175	8088247	NM_001128615	ARHGEF3	0.563172	4.005691e-10	6.940661e-6	1.652538e-7
43	7961175	7996081	NM_201524	GPR56	0.563118	4.024467e-10	6.973193e-6	1.621673e-7
44	7961175	7933164	NM_004966	HNRNPF	0.562984	4.071184e-10	7.054141e-6	1.603214e-7
45	7961175	8099760	NM_015230	ARAP2	0.562965	4.078007e-10	7.065963e-6	1.570214e-7
46	7961175	8091103	NM_006286	TFDP2	0.562801	4.136384e-10	7.167113e-6	1.558068e-7
47	7961175	7902594	NM_182948	PRKACB	0.562339	4.304775e-10	7.458883e-6	1.586996e-7
48	7961175	7963614	NM_000889	ITGB7	0.562041	4.417015e-10	7.653361e-6	1.594450e-7
49	7961175	7933582	NM_006327	TIMM23	0.560840	4.898345e-10	8.487363e-6	1.732115e-7
50	7961175	8136614	NM_018238	AGK	0.560662	4.973812e-10	8.618123e-6	1.723625e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation