[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4621	7973840	NM_001030055	ARHGAP5		Rho GTPase activating protein 5

Fetching correlation data, please wait...
Getting list of correlations for id 4621.
Getting list of p-values for id 4621.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7973840	7947221	NM_018362	LIN7C	0.801237	1.034207e-24	1.791971e-20	1.791971e-20
2	7973840	8113733	NM_153223	CEP120	0.792099	8.148098e-24	1.411821e-19	7.059104e-20
3	7973840	8041149	NM_015131	WDR43	0.780993	8.748319e-23	1.515821e-18	5.052737e-19
4	7973840	8028227	NM_152604	ZNF383	0.780657	9.379566e-23	1.625197e-18	4.062993e-19
5	7973840	7970569	NM_014363	SACS	0.777916	1.648042e-22	2.855563e-18	5.711125e-19
6	7973840	8094719	NM_018177	N4BP2	0.776045	2.410408e-22	4.176514e-18	6.960856e-19
7	7973840	8047815	NM_001136194	FASTKD2	0.771823	5.608011e-22	9.717001e-18	1.388143e-18
8	7973840	8147156	NM_007013	WWP1	0.771123	6.440141e-22	1.115883e-17	1.394854e-18
9	7973840	8023735	NM_019022	TMX3	0.770412	7.407404e-22	1.283481e-17	1.426090e-18
10	7973840	8096463	NM_001128429	SMARCAD1	0.769981	8.061024e-22	1.396734e-17	1.396734e-18
11	7973840	8105612	NM_005869	CWC27	0.768856	1.004398e-21	1.740320e-17	1.582109e-18
12	7973840	7957540	NM_014050	MRPL42	0.766653	1.539749e-21	2.667923e-17	2.223269e-18
13	7973840	8111892	NM_000436	OXCT1	0.765861	1.793243e-21	3.107153e-17	2.390117e-18
14	7973840	8171747	NM_001412	EIF1AX	0.765631	1.874094e-21	3.247242e-17	2.319459e-18
15	7973840	7913712	NM_006625	SRSF10	0.764468	2.340896e-21	4.056071e-17	2.704047e-18
16	7973840	8020323	NM_003799	RNMT	0.763747	2.685412e-21	4.653013e-17	2.908133e-18
17	7973840	8128472	NM_006828	ASCC3	0.762347	3.500868e-21	6.065954e-17	3.568208e-18
18	7973840	8107282	NM_139281	WDR36	0.759389	6.094007e-21	1.055909e-16	5.866159e-18
19	7973840	8142019	NM_002553	ORC5L	0.759363	6.123183e-21	1.060964e-16	5.584021e-18
20	7973840	7962427	NM_031292	PUS7L	0.759250	6.253678e-21	1.083575e-16	5.417874e-18
21	7973840	7965022	NM_007043	KRR1	0.759071	6.465437e-21	1.120266e-16	5.334601e-18
22	7973840	7943297	NM_014679	CEP57	0.758383	7.344627e-21	1.272604e-16	5.784561e-18
23	7973840	8078270	NM_002948	RPL15	0.757090	9.323786e-21	1.615532e-16	7.024054e-18
24	7973840	7917088	NM_005482	PIGK	0.756292	1.079494e-20	1.870439e-16	7.793498e-18
25	7973840	7962312	NM_005164	ABCD2	0.756113	1.115505e-20	1.932836e-16	7.731344e-18
26	7973840	7923119	NM_194314	ZBTB41	0.755560	1.234364e-20	2.138783e-16	8.226090e-18
27	7973840	8088219	NM_001112736	C3orf63	0.755161	1.327410e-20	2.300003e-16	8.518529e-18
28	7973840	7975068	NM_001123329	ZBTB1	0.754421	1.518786e-20	2.631601e-16	9.398574e-18
29	7973840	7946812	NM_001017	RPS13	0.754155	1.594020e-20	2.761958e-16	9.523995e-18
30	7973840	7989159	NM_017661	ZNF280D	0.752625	2.101937e-20	3.642026e-16	1.214009e-17
31	7973840	7917103	NM_015534	ZZZ3	0.752438	2.173535e-20	3.766084e-16	1.214866e-17
32	7973840	8092564	NM_004593	TRA2B	0.752437	2.174234e-20	3.767295e-16	1.177280e-17
33	7973840	7901418	NM_152265	BTF3L4	0.752029	2.339564e-20	4.053763e-16	1.228413e-17
34	7973840	7950544	NM_004705	PRKRIR	0.751958	2.369464e-20	4.105570e-16	1.207520e-17
35	7973840	8098985	NM_024511	HAUS3	0.751842	2.419281e-20	4.191888e-16	1.197682e-17
36	7973840	7986765	NM_000969	RPL5	0.749713	3.538384e-20	6.130957e-16	1.703044e-17
37	7973840	8084986	NM_032288	FYTTD1	0.749699	3.546976e-20	6.145846e-16	1.661039e-17
38	7973840	7901895	NM_032852	ATG4C	0.749647	3.579901e-20	6.202895e-16	1.632341e-17
39	7973840	7971184	NM_005830	MRPS31	0.749412	3.732253e-20	6.466874e-16	1.658173e-17
40	7973840	8083063	NM_001104647	SLC25A36	0.749094	3.948781e-20	6.842053e-16	1.710513e-17
41	7973840	8166442	NM_014888	FAM3C	0.747963	4.821571e-20	8.354336e-16	2.037643e-17
42	7973840	8063283	NM_001316	CSE1L	0.747713	5.038683e-20	8.730527e-16	2.078697e-17
43	7973840	7909992	NM_015176	FBXO28	0.747320	5.398894e-20	9.354664e-16	2.175503e-17
44	7973840	7943314	NM_003772	JRKL	0.746798	5.917294e-20	1.025290e-15	2.330203e-17
45	7973840	8121161	NM_015323	KIAA0776	0.746389	6.356144e-20	1.101329e-15	2.447398e-17
46	7973840	8027416	NM_003796	C19orf2	0.745504	7.418191e-20	1.285350e-15	2.794239e-17
47	7973840	8036813	NM_001005851	ZNF780B	0.745205	7.814002e-20	1.353932e-15	2.880707e-17
48	7973840	7926609	NM_005180	BMI1	0.745024	8.063326e-20	1.397132e-15	2.910693e-17
49	7973840	8021418	NM_006785	MALT1	0.744922	8.207498e-20	1.422113e-15	2.902272e-17
50	7973840	7954613	NM_018318	CCDC91	0.743575	1.036341e-19	1.795668e-15	3.591337e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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