[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2102	8008736	NM_006151	LPO		lactoperoxidase

Fetching correlation data, please wait...
Getting list of correlations for id 2102.
Getting list of p-values for id 2102.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8008736	7990683	NM_015162	ACSBG1	0.773656	3.895480e-22	6.749698e-18	6.749698e-18
2	8008736	8053872	NM_001002036	ASTL	0.767218	1.380375e-21	2.391776e-17	1.195888e-17
3	8008736	7927367	NM_001040084	ANXA8	0.766944	1.455485e-21	2.521919e-17	8.406396e-18
4	8008736	8132832	AK057400	LOC100129427	0.763620	2.750855e-21	4.766407e-17	1.191602e-17
5	8008736	7927307	NM_001630	ANXA8L2	0.762814	3.205064e-21	5.553415e-17	1.110683e-17
6	8008736	8034151	NM_020812	DOCK6	0.752230	2.256378e-20	3.909626e-16	6.516043e-17
7	8008736	8162283	NM_004560	ROR2	0.742284	1.294243e-19	2.242534e-15	3.203621e-16
8	8008736	7937560	NM_002457	MUC2	0.737430	2.949192e-19	5.110065e-15	6.387581e-16
9	8008736	7987701	NM_016642	SPTBN5	0.735845	3.843956e-19	6.660423e-15	7.400470e-16
10	8008736	8004842	NM_173728	ARHGEF15	0.735445	4.108677e-19	7.119105e-15	7.119105e-16
11	8008736	8153101	NM_152888	COL22A1	0.735262	4.235587e-19	7.339002e-15	6.671820e-16
12	8008736	7962625	NM_001098531	RAPGEF3	0.733151	6.005357e-19	1.040548e-14	8.671236e-16
13	8008736	8163548	NM_138424	KIF12	0.732100	7.136639e-19	1.236565e-14	9.512041e-16
14	8008736	7916654	NM_181712	KANK4	0.730334	9.519343e-19	1.649417e-14	1.178155e-15
15	8008736	8042537	NM_001692	ATP6V1B1	0.729102	1.162410e-18	2.014107e-14	1.342738e-15
16	8008736	8001014	NM_173502	PRSS36	0.728056	1.376058e-18	2.384295e-14	1.490184e-15
17	8008736	7913450	NM_005529	HSPG2	0.726470	1.774451e-18	3.074591e-14	1.808583e-15
18	8008736	8067602	NM_152864	NKAIN4	0.726469	1.774725e-18	3.075065e-14	1.708370e-15
19	8008736	7977646	NM_016423	ZNF219	0.725123	2.199338e-18	3.810793e-14	2.005680e-15
20	8008736	8115691	NM_003062	SLIT3	0.725045	2.226652e-18	3.858119e-14	1.929060e-15
21	8008736	8067506	BC137326	C20orf151	0.724871	2.289003e-18	3.966156e-14	1.888646e-15
22	8008736	7936762	NM_001001976	ATE1	-0.723604	2.797242e-18	4.846781e-14	2.203082e-15
23	8008736	8123446	NM_022138	SMOC2	0.723558	2.817384e-18	4.881680e-14	2.122470e-15
24	8008736	7997801	NM_013278	IL17C	0.723405	2.886015e-18	5.000598e-14	2.083583e-15
25	8008736	8072436	NM_001002837	INPP5J	0.722745	3.202095e-18	5.548269e-14	2.219308e-15
26	8008736	8110821	NM_001044	SLC6A3	0.722693	3.228252e-18	5.593592e-14	2.151382e-15
27	8008736	7901247	NM_172225	DMBX1	0.722372	3.395597e-18	5.883551e-14	2.179093e-15
28	8008736	8116033	NM_000505	F12	0.720941	4.247079e-18	7.358914e-14	2.628184e-15
29	8008736	8104281	NM_182632	SLC6A18	0.720730	4.389637e-18	7.605924e-14	2.622733e-15
30	8008736	8046922	NM_000090	COL3A1	0.718867	5.860816e-18	1.015504e-13	3.385012e-15
31	8008736	8010071	NM_001088	AANAT	0.718178	6.518437e-18	1.129449e-13	3.643385e-15
32	8008736	8007537	NM_145273	CD300LG	0.716875	7.964102e-18	1.379940e-13	4.312312e-15
33	8008736	7960744	NM_001733	C1R	0.715730	9.487000e-18	1.643812e-13	4.981250e-15
34	8008736	8154132	NR_026663	C9orf70	0.714981	1.063367e-17	1.842495e-13	5.419103e-15
35	8008736	8159734	NM_000718	CACNA1B	0.714543	1.136506e-17	1.969224e-13	5.626353e-15
36	8008736	8024373	NM_001039846	IZUMO4	0.713407	1.349626e-17	2.338497e-13	6.495826e-15
37	8008736	8153167	NM_016601	KCNK9	0.713395	1.352119e-17	2.342817e-13	6.331938e-15
38	8008736	8137783	NM_001097620	TMEM184A	0.712648	1.513284e-17	2.622068e-13	6.900178e-15
39	8008736	7977418	NM_001134875	C14orf80	0.712481	1.551780e-17	2.688768e-13	6.894278e-15
40	8008736	8027152	NM_004386	NCAN	0.712237	1.609660e-17	2.789058e-13	6.972645e-15
41	8008736	8061529	NM_014012	REM1	0.712215	1.614948e-17	2.798220e-13	6.824927e-15
42	8008736	7937612	NM_002458	MUC5B	0.712022	1.662510e-17	2.880631e-13	6.858645e-15
43	8008736	8110183	NM_017675	CDHR2	0.711749	1.732008e-17	3.001051e-13	6.979189e-15
44	8008736	7913290	NM_001103161	SH2D5	0.709925	2.274588e-17	3.941179e-13	8.957226e-15
45	8008736	8014706	NM_007144	PCGF2	0.709167	2.545329e-17	4.410291e-13	9.800648e-15
46	8008736	8066683	NM_021248	CDH22	0.709050	2.589854e-17	4.487441e-13	9.755306e-15
47	8008736	7946860	NM_000352	ABCC8	0.709047	2.591158e-17	4.489700e-13	9.552553e-15
48	8008736	8006562	NM_033315	RASL10B	0.708664	2.742301e-17	4.751585e-13	9.899135e-15
49	8008736	7931764	NM_018702	ADARB2	0.707036	3.486929e-17	6.041802e-13	1.233021e-14
50	8008736	8032312	NM_138813	ATP8B3	0.706967	3.522417e-17	6.103293e-13	1.220659e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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