[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4559	8175685	NM_021049	MAGEA5		melanoma antigen family A, 5

Fetching correlation data, please wait...
Getting list of correlations for id 4559.
Getting list of p-values for id 4559.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8175685	8153101	NM_152888	COL22A1	0.753155	1.910242e-20	3.309876e-16	3.309876e-16
2	8175685	8134827	NM_173564	C7orf51	0.729831	1.032946e-18	1.789786e-14	8.948929e-15
3	8175685	8027854	NM_005303	FFAR1	0.722150	3.515590e-18	6.091463e-14	2.030488e-14
4	8175685	8033825	NM_015719	COL5A3	0.721600	3.831947e-18	6.639614e-14	1.659904e-14
5	8175685	8137151	NM_198455	SSPO	0.720693	4.415026e-18	7.649915e-14	1.529983e-14
6	8175685	7912706	NM_004431	EPHA2	0.719433	5.369414e-18	9.303584e-14	1.550597e-14
7	8175685	8086985	NM_000094	COL7A1	0.719427	5.374282e-18	9.312019e-14	1.330288e-14
8	8175685	8125568	NM_080680	COL11A2	0.717025	7.783060e-18	1.348571e-13	1.685714e-14
9	8175685	8157383	NM_032888	COL27A1	0.716867	7.972996e-18	1.381481e-13	1.534979e-14
10	8175685	8067867	ENST00000364942		0.710015	2.244230e-17	3.888577e-13	3.888577e-14
11	8175685	8014269	NM_139285	GAS2L2	0.709791	2.320330e-17	4.020436e-13	3.654942e-14
12	8175685	8063601	NM_178456	C20orf85	0.706611	3.711168e-17	6.430341e-13	5.358617e-14
13	8175685	7948588	NM_004200	SYT7	0.705606	4.299347e-17	7.449478e-13	5.730368e-14
14	8175685	7914361	NM_001856	COL16A1	0.703768	5.618171e-17	9.734604e-13	6.953289e-14
15	8175685	8008110	ENST00000376699		0.702802	6.461230e-17	1.119537e-12	7.463582e-14
16	8175685	8159624	BC052297	C9orf169	0.699263	1.073055e-16	1.859283e-12	1.162052e-13
17	8175685	7915229	NM_014571	HEYL	0.697492	1.379524e-16	2.390301e-12	1.406059e-13
18	8175685	7931439	NM_006426	DPYSL4	0.697089	1.460172e-16	2.530040e-12	1.405578e-13
19	8175685	8049729	NM_198998	AQP12A	0.694892	1.987905e-16	3.444443e-12	1.812865e-13
20	8175685	8125234	NM_019105	TNXB	0.694569	2.079799e-16	3.603667e-12	1.801833e-13
21	8175685	8064059	NM_020882	COL20A1	0.692492	2.775786e-16	4.809605e-12	2.290288e-13
22	8175685	8173629	NM_004299	ABCB7	-0.692128	2.919088e-16	5.057904e-12	2.299047e-13
23	8175685	7900792	NM_002840	PTPRF	0.690985	3.417820e-16	5.922057e-12	2.574808e-13
24	8175685	8027556	NM_002333	LRP3	0.690732	3.538821e-16	6.131716e-12	2.554882e-13
25	8175685	8176669	ENST00000384790		0.690416	3.695489e-16	6.403173e-12	2.561269e-13
26	8175685	8177189	ENST00000384790		0.690416	3.695489e-16	6.403173e-12	2.462759e-13
27	8175685	8067820	BC024764	IQSEC3	0.690190	3.812223e-16	6.605438e-12	2.446459e-13
28	8175685	8085195	NM_198560	LHFPL4	0.690030	3.896743e-16	6.751887e-12	2.411388e-13
29	8175685	7921773	NM_030916	PVRL4	0.690018	3.903233e-16	6.763132e-12	2.332114e-13
30	8175685	7998494	NM_001143980	CCDC154	0.690017	3.903633e-16	6.763825e-12	2.254608e-13
31	8175685	8067409	NM_005560	LAMA5	0.689103	4.423537e-16	7.664662e-12	2.472472e-13
32	8175685	8011912	NM_014336	AIPL1	0.688495	4.805692e-16	8.326822e-12	2.602132e-13
33	8175685	8016646	NM_000088	COL1A1	0.686733	6.104846e-16	1.057787e-11	3.205414e-13
34	8175685	8031499	AF086519	SSC5D	0.686414	6.373185e-16	1.104282e-11	3.247888e-13
35	8175685	7966690	NM_016569	TBX3	0.686250	6.516672e-16	1.129144e-11	3.226125e-13
36	8175685	8019181	ENST00000456250		0.686011	6.729485e-16	1.166018e-11	3.238938e-13
37	8175685	7998629	ENST00000431136		0.685333	7.373684e-16	1.277638e-11	3.453076e-13
38	8175685	7952893	BC024764	IQSEC3	0.683661	9.225698e-16	1.598537e-11	4.206676e-13
39	8175685	8159086	NM_014694	ADAMTSL2	0.683526	9.394282e-16	1.627747e-11	4.173711e-13
40	8175685	7992302	NM_020825	CRAMP1L	0.683521	9.399928e-16	1.628725e-11	4.071814e-13
41	8175685	7904927	NM_005267	GJA8	0.682614	1.060829e-15	1.838098e-11	4.483167e-13
42	8175685	8094960	NM_152679	SLC10A4	0.682612	1.061073e-15	1.838521e-11	4.377431e-13
43	8175685	7926609	NM_005180	BMI1	-0.682570	1.067069e-15	1.848910e-11	4.299790e-13
44	8175685	7949015	NM_001144936	C11orf95	0.682238	1.115233e-15	1.932365e-11	4.391738e-13
45	8175685	8003926	NM_001136046	ZMYND15	0.681784	1.184483e-15	2.052353e-11	4.560784e-13
46	8175685	8010030	NM_003857	GALR2	0.681300	1.262930e-15	2.188279e-11	4.757128e-13
47	8175685	8048205	NM_000597	IGFBP2	0.681175	1.284068e-15	2.224905e-11	4.733841e-13
48	8175685	8007259	ENST00000225928		0.681150	1.288334e-15	2.232296e-11	4.650616e-13
49	8175685	7903239	NM_000028	AGL	-0.680450	1.413020e-15	2.448341e-11	4.996613e-13
50	8175685	7934544	NM_144589	COMTD1	0.680442	1.414532e-15	2.450960e-11	4.901921e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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