[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1990	8123407	NM_001040001	MLLT4		myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4

Fetching correlation data, please wait...
Getting list of correlations for id 1990.
Getting list of p-values for id 1990.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.105 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8123407	7987584	NM_017553	INO80	0.414473	1.104548e-5	1.913851e-1	1.913851e-1
2	8123407	7977693	NM_020920	CHD8	0.387328	4.466070e-5	7.738360e-1	3.869180e-1
3	8123407	8086482	NM_181489	ZNF445	0.377750	7.106778e-5	1.231391e+0	4.104638e-1
4	8123407	7963174	NM_147190	LASS5	0.375972	7.734457e-5	1.340149e+0	3.350374e-1
5	8123407	8000507	NM_001037808	EIF3C	0.375709	7.831645e-5	1.356989e+0	2.713978e-1
6	8123407	7994415	NM_001037808	EIF3C	0.375709	7.831645e-5	1.356989e+0	2.261649e-1
7	8123407	8027074	NM_002911	UPF1	0.373642	8.635693e-5	1.496307e+0	2.137581e-1
8	8123407	7999326	NM_003470	USP7	0.370582	9.967452e-5	1.727060e+0	2.158825e-1
9	8123407	8127484	NM_080742	B3GAT2	-0.369721	1.037535e-4	1.797737e+0	1.997485e-1
10	8123407	8033023	NM_001134316	PRR22	-0.367463	1.152008e-4	1.996084e+0	1.996084e-1
11	8123407	7971422	NM_015070	ZC3H13	0.364199	1.338335e-4	2.318933e+0	2.108121e-1
12	8123407	7960575	NM_001033714	NOP2	0.362717	1.431885e-4	2.481028e+0	2.067523e-1
13	8123407	7993453	NM_173803	MPV17L	-0.361645	1.503273e-4	2.604722e+0	2.003632e-1
14	8123407	8024936	NM_002967	SAFB	0.357935	1.776580e-4	3.078280e+0	2.198771e-1
15	8123407	7899703	NM_175852	TXLNA	0.356268	1.913770e-4	3.315989e+0	2.210660e-1
16	8123407	7961900	NM_002223	ITPR2	0.355627	1.969166e-4	3.411975e+0	2.132484e-1
17	8123407	7960794	NM_004244	CD163	0.353859	2.129484e-4	3.689756e+0	2.170445e-1
18	8123407	8007397	NM_176863	PSME3	0.353365	2.176418e-4	3.771080e+0	2.095044e-1
19	8123407	7987840	NM_015289	VPS39	0.352234	2.287527e-4	3.963598e+0	2.086104e-1
20	8123407	7998825	NM_002613	PDPK1	0.351848	2.326636e-4	4.031363e+0	2.015681e-1
21	8123407	8062213	NM_016436	PHF20	0.351650	2.346888e-4	4.066452e+0	1.936406e-1
22	8123407	7915261	NM_017646	TRIT1	0.351168	2.396904e-4	4.153116e+0	1.887780e-1
23	8123407	7905700	NM_014847	UBAP2L	0.350912	2.423929e-4	4.199941e+0	1.826061e-1
24	8123407	8108330	NM_016604	KDM3B	0.349862	2.537650e-4	4.396987e+0	1.832078e-1
25	8123407	7953274	NM_000217	KCNA1	-0.349446	2.583982e-4	4.477266e+0	1.790906e-1
26	8123407	8164165	NM_005347	HSPA5	0.348943	2.641142e-4	4.576307e+0	1.760118e-1
27	8123407	8005903	NM_003170	SUPT6H	0.348313	2.714441e-4	4.703312e+0	1.741967e-1
28	8123407	8069880	NM_003253	TIAM1	0.348000	2.751470e-4	4.767472e+0	1.702669e-1
29	8123407	8011077	NM_006224	PITPNA	0.347948	2.757663e-4	4.778202e+0	1.647656e-1
30	8123407	8008933	NM_001099432	BCAS3	0.346761	2.902792e-4	5.029668e+0	1.676556e-1
31	8123407	8161701	NM_013390	TMEM2	0.346714	2.908650e-4	5.039818e+0	1.625748e-1
32	8123407	8173269	NM_031206	LAS1L	0.345614	3.049743e-4	5.284290e+0	1.651341e-1
33	8123407	8061799	NM_174897	BPIL3	-0.344641	3.179697e-4	5.509461e+0	1.669534e-1
34	8123407	7920810	NM_001037533	GON4L	0.344381	3.215293e-4	5.571138e+0	1.638570e-1
35	8123407	8011141	NM_006445	PRPF8	0.343638	3.319067e-4	5.750948e+0	1.643128e-1
36	8123407	8102998	NM_002099	GYPA	-0.343590	3.325918e-4	5.762817e+0	1.600783e-1
37	8123407	8060528	NM_080739	C20orf141	-0.343515	3.336586e-4	5.781302e+0	1.562514e-1
38	8123407	8109843	NM_004946	DOCK2	0.342940	3.419385e-4	5.924768e+0	1.559150e-1
39	8123407	7897078	NM_007033	RER1	0.342394	3.499625e-4	6.063800e+0	1.554821e-1
40	8123407	8041888	NM_000179	MSH6	0.341572	3.623995e-4	6.279295e+0	1.569824e-1
41	8123407	8061815	NM_182658	C20orf185	-0.341176	3.685284e-4	6.385492e+0	1.557437e-1
42	8123407	8016433	NM_002144	HOXB1	-0.340992	3.714018e-4	6.435279e+0	1.532209e-1
43	8123407	7952557	NM_003139	SRPR	0.339903	3.888912e-4	6.738318e+0	1.567051e-1
44	8123407	8146285	NM_152419	HGSNAT	0.339806	3.904778e-4	6.765809e+0	1.537684e-1
45	8123407	8015218	NM_031960	KRTAP4-8	-0.339747	3.914596e-4	6.782821e+0	1.507293e-1
46	8123407	7904000	NM_007204	DDX20	0.339447	3.964253e-4	6.868861e+0	1.493231e-1
47	8123407	7952830	NM_015261	NCAPD3	0.338979	4.043189e-4	7.005633e+0	1.490560e-1
48	8123407	7898256	NM_001013641	TMEM82	-0.338580	4.111457e-4	7.123922e+0	1.484150e-1
49	8123407	7981192	NM_018036	ATG2B	0.338297	4.160633e-4	7.209130e+0	1.471251e-1
50	8123407	8055021	NM_017969	IWS1	0.337101	4.374120e-4	7.579037e+0	1.515807e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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