[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6780	7915261	NM_017646	TRIT1		tRNA isopentenyltransferase 1

Fetching correlation data, please wait...
Getting list of correlations for id 6780.
Getting list of p-values for id 6780.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.146 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7915261	7926021	NM_001145547	RBM17	0.678389	1.852603e-15	3.210005e-11	3.210005e-11
2	7915261	7935951	NM_024541	C10orf76	0.675012	2.873783e-15	4.979404e-11	2.489702e-11
3	7915261	8147447	NM_014754	PTDSS1	0.673259	3.600959e-15	6.239381e-11	2.079794e-11
4	7915261	8145636	NM_024567	HMBOX1	0.652013	4.931252e-14	8.544380e-10	2.136095e-10
5	7915261	8064351	NM_177559	CSNK2A1	0.649156	6.901923e-14	1.195896e-9	2.391792e-10
6	7915261	7980271	NM_033116	NEK9	0.645746	1.026076e-13	1.777881e-9	2.963135e-10
7	7915261	8018600	NM_014230	SRP68	0.645549	1.049679e-13	1.818779e-9	2.598255e-10
8	7915261	8117646	NM_006298	ZNF192	0.642186	1.544239e-13	2.675702e-9	3.344628e-10
9	7915261	8066303	NM_032221	CHD6	0.638077	2.458611e-13	4.260035e-9	4.733372e-10
10	7915261	7982957	NM_001080541	MGA	0.637155	2.726579e-13	4.724344e-9	4.724344e-10
11	7915261	8009205	NM_007372	DDX42	0.636998	2.775102e-13	4.808419e-9	4.371290e-10
12	7915261	7993185	NM_002484	NUBP1	0.636907	2.803521e-13	4.857661e-9	4.048051e-10
13	7915261	8051998	NM_139279	MCFD2	0.636369	2.976972e-13	5.158199e-9	3.967845e-10
14	7915261	8053533	NM_006839	IMMT	0.635523	3.271531e-13	5.668582e-9	4.048987e-10
15	7915261	7903619	NM_006513	SARS	0.634441	3.689394e-13	6.392614e-9	4.261743e-10
16	7915261	7964246	NR_003046	SNORD59B	0.634185	3.795834e-13	6.577041e-9	4.110651e-10
17	7915261	8154793	NM_002504	NFX1	0.632811	4.417707e-13	7.654561e-9	4.502683e-10
18	7915261	8035193	NM_024104	C19orf42	0.632723	4.460771e-13	7.729178e-9	4.293988e-10
19	7915261	7957890	NM_014503	UTP20	0.630419	5.744065e-13	9.952742e-9	5.238285e-10
20	7915261	8070579	NM_003225	TFF1	-0.630175	5.899108e-13	1.022138e-8	5.110692e-10
21	7915261	7979849	NM_003861	DCAF5	0.629034	6.680242e-13	1.157485e-8	5.511836e-10
22	7915261	8107750	NM_130809	PRRC1	0.628477	7.096591e-13	1.229626e-8	5.589210e-10
23	7915261	7963750	NM_012117	CBX5	0.627205	8.144381e-13	1.411177e-8	6.135552e-10
24	7915261	8145922	NM_015214	DDHD2	0.626989	8.337118e-13	1.444572e-8	6.019052e-10
25	7915261	8008530	NM_016001	UTP18	0.625765	9.512197e-13	1.648178e-8	6.592714e-10
26	7915261	8048120	NM_004044	ATIC	0.623551	1.205593e-12	2.088931e-8	8.034350e-10
27	7915261	8016099	NM_004247	EFTUD2	0.622662	1.325207e-12	2.296187e-8	8.504396e-10
28	7915261	8158714	NM_014285	EXOSC2	0.622398	1.362812e-12	2.361344e-8	8.433373e-10
29	7915261	7925996	NM_032807	FBXO18	0.621620	1.480100e-12	2.564569e-8	8.843342e-10
30	7915261	8162850	NM_017746	TEX10	0.621454	1.506339e-12	2.610034e-8	8.700115e-10
31	7915261	8118218	NM_001320	CSNK2B	0.620936	1.591155e-12	2.756995e-8	8.893532e-10
32	7915261	7916262	BC010908	C1orf123	0.619609	1.829982e-12	3.170809e-8	9.908779e-10
33	7915261	8170971	NM_001363	DKC1	0.619586	1.834413e-12	3.178488e-8	9.631781e-10
34	7915261	8179298	NM_001320	CSNK2B	0.619223	1.905660e-12	3.301938e-8	9.711582e-10
35	7915261	7925851	NM_014023	WDR37	0.618793	1.993600e-12	3.454311e-8	9.869460e-10
36	7915261	8069880	NM_003253	TIAM1	0.618790	1.994261e-12	3.455457e-8	9.598491e-10
37	7915261	8006715	NM_001488	TADA2A	0.618758	2.000981e-12	3.467100e-8	9.370541e-10
38	7915261	8178050	NM_001320	CSNK2B	0.618444	2.067719e-12	3.582736e-8	9.428253e-10
39	7915261	8063242	NM_006420	ARFGEF2	0.618440	2.068596e-12	3.584256e-8	9.190401e-10
40	7915261	8072529	NM_014662	DEPDC5	0.617976	2.171527e-12	3.762604e-8	9.406510e-10
41	7915261	8055060	NM_018383	WDR33	0.616966	2.412816e-12	4.180686e-8	1.019679e-9
42	7915261	8134211	NM_032120	C7orf64	0.616952	2.416331e-12	4.186776e-8	9.968515e-10
43	7915261	8045349	NM_002410	MGAT5	0.616686	2.484324e-12	4.304588e-8	1.001067e-9
44	7915261	8040985	NM_032434	ZNF512	0.616666	2.489495e-12	4.313547e-8	9.803516e-10
45	7915261	7914764	NM_007167	ZMYM6	0.616549	2.519880e-12	4.366197e-8	9.702659e-10
46	7915261	8143643	NM_022445	TPK1	0.615592	2.783033e-12	4.822162e-8	1.048296e-9
47	7915261	8123274	NM_005922	MAP3K4	0.615292	2.870900e-12	4.974409e-8	1.058385e-9
48	7915261	7929634	NM_198046	ZDHHC16	0.615278	2.875205e-12	4.981867e-8	1.037889e-9
49	7915261	8074384	NM_005315	GSC2	-0.614956	2.972629e-12	5.150673e-8	1.051158e-9
50	7915261	8092328	NM_020166	MCCC1	0.614237	3.201608e-12	5.547426e-8	1.109485e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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