[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4063	7973336	NM_004995	MMP14		matrix metallopeptidase 14 (membrane-inserted)

Fetching correlation data, please wait...
Getting list of correlations for id 4063.
Getting list of p-values for id 4063.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7973336	8004763	NM_000180	GUCY2D	0.821570	6.940844e-27	1.202640e-22	1.202640e-22
2	7973336	8030181	NM_033378	CGB2	0.819100	1.317618e-26	2.283037e-22	1.141519e-22
3	7973336	8039504	NM_001145176	SHISA7	0.816483	2.571727e-26	4.456031e-22	1.485344e-22
4	7973336	8156415	NM_006648	WNK2	0.814451	4.290988e-26	7.434995e-22	1.858749e-22
5	7973336	8027222	NM_153221	CILP2	0.812178	7.551400e-26	1.308431e-21	2.616862e-22
6	7973336	8158554	NM_016307	PRRX2	0.810842	1.048783e-25	1.817227e-21	3.028712e-22
7	7973336	8131087	NM_001080461	UNCX	0.810563	1.123000e-25	1.945823e-21	2.779747e-22
8	7973336	8006063	NM_152345	ANKRD13B	0.807946	2.119742e-25	3.672877e-21	4.591097e-22
9	7973336	8064242	NR_027686	NCRNA00176	0.807415	2.408389e-25	4.173016e-21	4.636684e-22
10	7973336	8001449	NM_024336	IRX3	0.806592	2.933362e-25	5.082636e-21	5.082636e-22
11	7973336	8032034	NM_001136263	C2CD4C	0.805711	3.618923e-25	6.270507e-21	5.700461e-22
12	7973336	8024038	NM_001700	AZU1	0.805521	3.785687e-25	6.559460e-21	5.466217e-22
13	7973336	8030015	NM_012451	SYNGR4	0.804795	4.496651e-25	7.791347e-21	5.993344e-22
14	7973336	8133704	NM_001110199	SRRM3	0.804725	4.571892e-25	7.921717e-21	5.658369e-22
15	7973336	8074131	NM_001080420	SHANK3	0.803670	5.862111e-25	1.015728e-20	6.771520e-22
16	7973336	7998015	NM_032451	SPIRE2	0.802497	7.714506e-25	1.336692e-20	8.354327e-22
17	7973336	8137330	ENST00000356058		0.801834	9.004535e-25	1.560216e-20	9.177739e-22
18	7973336	8073449	NM_014460	CSDC2	0.801651	9.394777e-25	1.627833e-20	9.043517e-22
19	7973336	7998668	NM_144603	NOXO1	0.799858	1.421695e-24	2.463372e-20	1.296511e-21
20	7973336	8163599	NM_015404	DFNB31	0.799698	1.474990e-24	2.555716e-20	1.277858e-21
21	7973336	7977033	NM_030943	AMN	0.799341	1.600889e-24	2.773860e-20	1.320886e-21
22	7973336	8153828	NM_003923	FOXH1	0.797503	2.434554e-24	4.218352e-20	1.917433e-21
23	7973336	7911376	NM_001142467	HES4	0.796383	3.136462e-24	5.434547e-20	2.362846e-21
24	7973336	7911750	NM_001010926	HES5	0.795495	3.830047e-24	6.636322e-20	2.765134e-21
25	7973336	8074063	NM_024866	ADM2	0.794471	4.816212e-24	8.345050e-20	3.338020e-21
26	7973336	7896779	NM_198317	KLHL17	0.794051	5.288808e-24	9.163918e-20	3.524584e-21
27	7973336	8147573	NM_001142462	OSR2	0.793415	6.091342e-24	1.055447e-19	3.909063e-21
28	7973336	8153876	NM_025251	ARHGAP39	0.793291	6.260880e-24	1.084823e-19	3.874367e-21
29	7973336	8055476	NR_024058	YWHAE	-0.792357	7.697895e-24	1.333814e-19	4.599360e-21
30	7973336	7992460	NM_001099456	NPW	0.791955	8.410694e-24	1.457321e-19	4.857737e-21
31	7973336	7995310	ENST00000319817		0.791260	9.797137e-24	1.697550e-19	5.475968e-21
32	7973336	7979876	ENST00000413777		0.790978	1.042097e-23	1.805641e-19	5.642628e-21
33	7973336	8121209	NM_005604	POU3F2	0.789004	1.601551e-23	2.775007e-19	8.409111e-21
34	7973336	8036252	NM_015526	CLIP3	0.788729	1.699580e-23	2.944861e-19	8.661357e-21
35	7973336	8110382	NM_030567	PRR7	0.787659	2.140431e-23	3.708725e-19	1.059636e-20
36	7973336	8047736			0.787298	2.313301e-23	4.008257e-19	1.113405e-20
37	7973336	8098721	ENST00000362702		0.787297	2.313707e-23	4.008959e-19	1.083503e-20
38	7973336	8029530	NM_000041	APOE	0.787205	2.359825e-23	4.088869e-19	1.076018e-20
39	7973336	7992269	ENST00000301714		0.786888	2.525623e-23	4.376146e-19	1.122089e-20
40	7973336	7959761	NM_181709	FAM101A	0.786849	2.546636e-23	4.412555e-19	1.103139e-20
41	7973336	8098782	NM_006651	CPLX1	0.786372	2.820372e-23	4.886859e-19	1.191917e-20
42	7973336	8169519	NM_019045	WDR44	-0.784759	3.973874e-23	6.885531e-19	1.639412e-20
43	7973336	8074558	NM_023004	RTN4R	0.784706	4.018328e-23	6.962557e-19	1.619199e-20
44	7973336	8083183	NM_001080415	SR140	-0.784656	4.060658e-23	7.035902e-19	1.599069e-20
45	7973336	7955184	NM_006262	PRPH	0.784584	4.123367e-23	7.144559e-19	1.587680e-20
46	7973336	7984802	NM_001130136	ISLR2	0.784437	4.253928e-23	7.370781e-19	1.602344e-20
47	7973336	8013112	NM_016084	RASD1	0.783615	5.058227e-23	8.764389e-19	1.864764e-20
48	7973336	8060505	NM_001110514	EBF4	0.783605	5.069111e-23	8.783249e-19	1.829843e-20
49	7973336	8009430	NR_027283	LOC440461	0.783578	5.098279e-23	8.833789e-19	1.802814e-20
50	7973336	8153862	NM_001024678	LRRC24	0.783572	5.104425e-23	8.844438e-19	1.768888e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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