[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1065	8147573	NM_001142462	OSR2		odd-skipped related 2 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 1065.
Getting list of p-values for id 1065.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8147573	7915078	NM_173641	EPHA10	0.798139	2.106950e-24	3.650712e-20	3.650712e-20
2	8147573	8007363	NM_032387	WNK4	0.793815	5.573461e-24	9.657136e-20	4.828568e-20
3	8147573	7973336	NM_004995	MMP14	0.793415	6.091342e-24	1.055447e-19	3.518156e-20
4	8147573	8064242	NR_027686	NCRNA00176	0.786184	2.935870e-23	5.086981e-19	1.271745e-19
5	8147573	8013112	NM_016084	RASD1	0.784038	4.627163e-23	8.017486e-19	1.603497e-19
6	8147573	8030015	NM_012451	SYNGR4	0.780996	8.741621e-23	1.514661e-18	2.524434e-19
7	8147573	8158554	NM_016307	PRRX2	0.778442	1.479945e-22	2.564300e-18	3.663286e-19
8	8147573	8137330	ENST00000356058		0.777590	1.761246e-22	3.051710e-18	3.814638e-19
9	8147573	8153876	NM_025251	ARHGAP39	0.777340	1.853341e-22	3.211284e-18	3.568093e-19
10	8147573	8030181	NM_033378	CGB2	0.773561	3.970245e-22	6.879244e-18	6.879244e-19
11	8147573	8159670	NM_006647	NOXA1	0.772804	4.616232e-22	7.998545e-18	7.271405e-19
12	8147573	7991939	NM_145294	WDR90	0.770247	7.651058e-22	1.325699e-17	1.104749e-18
13	8147573	7940022	NM_178570	RTN4RL2	0.769692	8.530835e-22	1.478138e-17	1.137029e-18
14	8147573	8054154	NM_207362	C2orf55	0.769233	9.331899e-22	1.616938e-17	1.154956e-18
15	8147573	8046276	NM_001003845	SP5	0.769138	9.506745e-22	1.647234e-17	1.098156e-18
16	8147573	8060505	NM_001110514	EBF4	0.768591	1.057642e-21	1.832576e-17	1.145360e-18
17	8147573	8019576	NM_033184	KRTAP2-4	0.767337	1.349219e-21	2.337793e-17	1.375172e-18
18	8147573	8015210	NM_033184	KRTAP2-4	0.767337	1.349219e-21	2.337793e-17	1.298774e-18
19	8147573	8155942	NM_001013735	FOXB2	0.766621	1.549034e-21	2.684011e-17	1.412637e-18
20	8147573	7929840	NM_003987	PAX2	0.766048	1.729733e-21	2.997108e-17	1.498554e-18
21	8147573	8004763	NM_000180	GUCY2D	0.766002	1.745118e-21	3.023766e-17	1.439888e-18
22	8147573	8164632	NM_032843	FIBCD1	0.765969	1.756422e-21	3.043352e-17	1.383342e-18
23	8147573	7972291	NM_007084	SOX21	0.765385	1.964612e-21	3.404083e-17	1.480036e-18
24	8147573	8018220	NM_000835	GRIN2C	0.764515	2.320011e-21	4.019884e-17	1.674952e-18
25	8147573	8074131	NM_001080420	SHANK3	0.762174	3.616748e-21	6.266739e-17	2.506695e-18
26	8147573	8150928	NM_003580	NSMAF	-0.761512	4.097318e-21	7.099422e-17	2.730547e-18
27	8147573	7923360	NM_003281	TNNI1	0.760716	4.756886e-21	8.242257e-17	3.052688e-18
28	8147573	8131379	ENST00000384488		0.759586	5.874930e-21	1.017949e-16	3.635533e-18
29	8147573	7995193	NM_024742	ARMC5	0.759443	6.033041e-21	1.045345e-16	3.604638e-18
30	8147573	8006063	NM_152345	ANKRD13B	0.758291	7.471237e-21	1.294541e-16	4.315137e-18
31	8147573	8048460	NM_003936	CDK5R2	0.758246	7.533937e-21	1.305405e-16	4.210985e-18
32	8147573	7992758	NM_172229	KREMEN2	0.756827	9.786131e-21	1.695643e-16	5.298884e-18
33	8147573	8052018	NM_022055	KCNK12	0.756631	1.014525e-20	1.757868e-16	5.326874e-18
34	8147573	8013259	ENST00000300983		0.756543	1.031038e-20	1.786479e-16	5.254351e-18
35	8147573	8038299	NM_033142	CGB7	0.755974	1.144396e-20	1.982896e-16	5.665416e-18
36	8147573	8093826	NM_000683	ADRA2C	0.755933	1.153038e-20	1.997869e-16	5.549636e-18
37	8147573	8004152	NM_015253	WSCD1	0.755588	1.227926e-20	2.127628e-16	5.750346e-18
38	8147573	8098782	NM_006651	CPLX1	0.755560	1.234370e-20	2.138793e-16	5.628404e-18
39	8147573	7949080	NM_015080	NRXN2	0.755532	1.240640e-20	2.149658e-16	5.511943e-18
40	8147573	7984802	NM_001130136	ISLR2	0.755277	1.299694e-20	2.251979e-16	5.629948e-18
41	8147573	8121209	NM_005604	POU3F2	0.754831	1.409802e-20	2.442763e-16	5.957959e-18
42	8147573	8039504	NM_001145176	SHISA7	0.754697	1.444553e-20	2.502977e-16	5.959470e-18
43	8147573	7991459	NM_020211	RGMA	0.753949	1.654582e-20	2.866894e-16	6.667195e-18
44	8147573	8060134	NM_004321	KIF1A	0.753806	1.698082e-20	2.942268e-16	6.686972e-18
45	8147573	7937433	NM_000797	DRD4	0.753335	1.848949e-20	3.203674e-16	7.119275e-18
46	8147573	8035539	NM_001492	GDF1	0.752926	1.990756e-20	3.449382e-16	7.498657e-18
47	8147573	7899075	NM_004455	EXTL1	0.752814	2.031299e-20	3.519632e-16	7.488578e-18
48	8147573	8053728	NM_000798	DRD5	0.752812	2.032206e-20	3.521203e-16	7.335839e-18
49	8147573	8159036	NM_139025	ADAMTS13	0.752702	2.072918e-20	3.591744e-16	7.330091e-18
50	8147573	7945781	NM_003311	PHLDA2	0.752402	2.187872e-20	3.790926e-16	7.581852e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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