[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2527	7938730	NM_002478	MYOD1		myogenic differentiation 1

Fetching correlation data, please wait...
Getting list of correlations for id 2527.
Getting list of p-values for id 2527.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.145 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7938730	8013833	NM_178860	SEZ6	0.817012	2.248467e-26	3.895919e-22	3.895919e-22
2	7938730	8038299	NM_033142	CGB7	0.809391	1.494322e-25	2.589212e-21	1.294606e-21
3	7938730	7935983	NM_005029	PITX3	0.799091	1.695491e-24	2.937776e-20	9.792588e-21
4	7938730	7949021	NM_173587	RCOR2	0.796515	3.044826e-24	5.275770e-20	1.318943e-20
5	7938730	7942123	NM_053056	CCND1	0.795947	3.460057e-24	5.995240e-20	1.199048e-20
6	7938730	7976322	NM_001275	CHGA	0.793209	6.375647e-24	1.104708e-19	1.841181e-20
7	7938730	7922823	NM_025191	EDEM3	-0.792166	8.027955e-24	1.391004e-19	1.987148e-20
8	7938730	7942717	NM_000260	MYO7A	0.790430	1.174530e-23	2.035109e-19	2.543886e-20
9	7938730	7940022	NM_178570	RTN4RL2	0.789952	1.303588e-23	2.258726e-19	2.509696e-20
10	7938730	8028407	NM_000540	RYR1	0.789416	1.464623e-23	2.537753e-19	2.537753e-20
11	7938730	7898594	NM_000871	HTR6	0.787774	2.088123e-23	3.618091e-19	3.289173e-20
12	7938730	7896798	NM_032129	PLEKHN1	0.785626	3.306061e-23	5.728413e-19	4.773677e-20
13	7938730	8151609	NM_172239	REXO1L1	0.785588	3.332668e-23	5.774514e-19	4.441934e-20
14	7938730	7991296	NM_198525	KIF7	0.785309	3.536239e-23	6.127241e-19	4.376601e-20
15	7938730	8052024	NM_025133	FBXO11	-0.784561	4.143256e-23	7.179020e-19	4.786013e-20
16	7938730	7994052	NM_006043	HS3ST2	0.781910	7.229214e-23	1.252606e-18	7.828787e-20
17	7938730	8073941	ENST00000411210		0.781797	7.400648e-23	1.282310e-18	7.543002e-20
18	7938730	8138670	NM_031243	HNRNPA2B1	-0.780171	1.037054e-22	1.796903e-18	9.982797e-20
19	7938730	8111216	ENST00000426411		0.779847	1.108761e-22	1.921150e-18	1.011132e-19
20	7938730	7937263	NM_053280	ODF3	0.779529	1.183844e-22	2.051247e-18	1.025623e-19
21	7938730	7913450	NM_005529	HSPG2	0.778886	1.351262e-22	2.341332e-18	1.114920e-19
22	7938730	7955112	NM_181788	H1FNT	0.778654	1.417001e-22	2.455238e-18	1.116017e-19
23	7938730	8131087	NM_001080461	UNCX	0.778338	1.511788e-22	2.619474e-18	1.138902e-19
24	7938730	7929945	ENST00000437253		0.777748	1.705359e-22	2.954875e-18	1.231198e-19
25	7938730	7974771	NM_022495	C14orf135	-0.777426	1.821288e-22	3.155746e-18	1.262298e-19
26	7938730	8060134	NM_004321	KIF1A	0.777166	1.919930e-22	3.326662e-18	1.279486e-19
27	7938730	8113981	NM_004199	P4HA2	0.776964	2.000732e-22	3.466669e-18	1.283951e-19
28	7938730	8074131	NM_001080420	SHANK3	0.776347	2.267192e-22	3.928364e-18	1.402987e-19
29	7938730	8116033	NM_000505	F12	0.776010	2.427518e-22	4.206161e-18	1.450400e-19
30	7938730	8104447	ENST00000410122		0.774857	3.062523e-22	5.306433e-18	1.768811e-19
31	7938730	8079021	NM_001904	CTNNB1	-0.774536	3.266445e-22	5.659768e-18	1.825732e-19
32	7938730	7955305	NM_001652	AQP6	0.774408	3.351274e-22	5.806752e-18	1.814610e-19
33	7938730	8076169	NM_014293	NPTXR	0.773416	4.086330e-22	7.080385e-18	2.145571e-19
34	7938730	7931519	NM_152643	KNDC1	0.771967	5.451169e-22	9.445241e-18	2.778012e-19
35	7938730	8013384	NM_000691	ALDH3A1	0.771838	5.591702e-22	9.688743e-18	2.768212e-19
36	7938730	8030181	NM_033378	CGB2	0.771706	5.739607e-22	9.945017e-18	2.762505e-19
37	7938730	8083887	NM_005602	CLDN11	0.771209	6.332328e-22	1.097203e-17	2.965412e-19
38	7938730	7955184	NM_006262	PRPH	0.770191	7.735290e-22	1.340294e-17	3.527089e-19
39	7938730	8056959	NM_001080458	EVX2	0.769743	8.445619e-22	1.463372e-17	3.752237e-19
40	7938730	7990244	NM_005477	HCN4	0.768472	1.082379e-21	1.875437e-17	4.688593e-19
41	7938730	8054766	NM_001097	ACR	0.767486	1.310837e-21	2.271287e-17	5.539724e-19
42	7938730	8100902	NM_032217	ANKRD17	-0.767261	1.369181e-21	2.372379e-17	5.648522e-19
43	7938730	8029693	NM_006732	FOSB	0.767075	1.419094e-21	2.458864e-17	5.718288e-19
44	7938730	8133704	NM_001110199	SRRM3	0.766982	1.444836e-21	2.503467e-17	5.689698e-19
45	7938730	7968260	NM_145657	GSX1	0.766841	1.484848e-21	2.572796e-17	5.717325e-19
46	7938730	7984016	NM_207322	C2CD4A	0.766428	1.607863e-21	2.785945e-17	6.056402e-19
47	7938730	7918313	NM_001010985	MYBPHL	0.766382	1.622084e-21	2.810585e-17	5.979968e-19
48	7938730	7937560	NM_002457	MUC2	0.765847	1.798104e-21	3.115574e-17	6.490780e-19
49	7938730	8051668	ENST00000423361		0.765833	1.802874e-21	3.123839e-17	6.375182e-19
50	7938730	7992460	NM_001099456	NPW	0.765735	1.836989e-21	3.182951e-17	6.365902e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation