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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
7390 8123637 NM_000904 NQO2 link to infopage NAD(P)H dehydrogenase, quinone 2
14432 8116610 NM_000904 NQO2 link to infopage NAD(P)H dehydrogenase, quinone 2

Fetching correlation data, please wait...
Getting list of correlations for id 7390.
Getting list of p-values for id 7390.
1 of 2 done.
Getting list of correlations for id 14432.
Getting list of p-values for id 14432.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.154 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8116610 8041508 NM_012413 QPCT link to infopage 0.707331 3.338606e-17 1.156961e-12 1.156961e-12
2 8116610 8072744 NM_013416 NCF4 link to infopage 0.698853 1.137594e-16 3.942218e-12 1.971109e-12
3 8116610 7976976 NM_014844 TECPR2 link to infopage 0.675543 2.682985e-15 9.297618e-11 3.099206e-11
4 8116610 8104601 NM_006317 BASP1 link to infopage 0.675458 2.712834e-15 9.401056e-11 2.350264e-11
5 8116610 8103951 NM_001995 ACSL1 link to infopage 0.673170 3.642259e-15 1.262188e-10 2.524377e-11
6 8116610 7993035 NM_016936 UBN1 link to infopage 0.672067 4.194176e-15 1.453450e-10 2.422416e-11
7 8116610 7979085 NM_002863 PYGL link to infopage 0.669610 5.731666e-15 1.986251e-10 2.837502e-11
8 8116610 7983910 NM_020980 AQP9 link to infopage 0.662821 1.337524e-14 4.635055e-10 5.793819e-11
9 8116610 8094228 NM_004334 BST1 link to infopage 0.662566 1.380222e-14 4.783021e-10 5.314468e-11
10 8116610 8108321 NM_001135647 FAM53C link to infopage 0.658548 2.254850e-14 7.813956e-10 7.813956e-11
11 8116610 8149264 NM_024607 PPP1R3B link to infopage 0.655711 3.174355e-14 1.100041e-9 1.000037e-10
12 8116610 8162276 NM_005384 NFIL3 link to infopage 0.655058 3.432611e-14 1.189537e-9 9.912809e-11
13 8116610 7960518 NM_001065 TNFRSF1A link to infopage 0.654160 3.821677e-14 1.324364e-9 1.018742e-10
14 8116610 8136662 NM_004668 MGAM link to infopage 0.652831 4.476217e-14 1.551188e-9 1.107992e-10
15 8116610 7971486 NM_025113 C13orf18 link to infopage 0.652216 4.814364e-14 1.668370e-9 1.112247e-10
16 8116610 7996100 NM_170776 GPR97 link to infopage 0.651875 5.012476e-14 1.737023e-9 1.085640e-10
17 8116610 8101511 NM_014991 WDFY3 link to infopage 0.649926 6.305912e-14 2.185251e-9 1.285442e-10
18 8116610 7929616 NM_005479 FRAT1 link to infopage 0.649356 6.742147e-14 2.336424e-9 1.298013e-10
19 8116610 7996313 NM_144673 CMTM2 link to infopage 0.647085 8.786257e-14 3.044789e-9 1.602521e-10
20 8116610 8044919 NM_002881 RALB link to infopage 0.645685 1.033360e-13 3.581005e-9 1.790502e-10
21 8116610 8090630 NM_001017395 TMCC1 link to infopage 0.644760 1.149733e-13 3.984285e-9 1.897278e-10
22 8116610 8039096 NM_144687 NLRP12 link to infopage 0.642538 1.483329e-13 5.140328e-9 2.336513e-10
23 8116610 8043981 NM_004633 IL1R2 link to infopage 0.641300 1.708048e-13 5.919068e-9 2.573508e-10
24 8116610 8135514 NM_001550 IFRD1 link to infopage 0.641028 1.761830e-13 6.105444e-9 2.543935e-10
25 8116610 7940191 NM_004177 STX3 link to infopage 0.639549 2.083023e-13 7.218509e-9 2.887404e-10
26 8116610 8013788 NM_004475 FLOT2 link to infopage 0.639113 2.188066e-13 7.582526e-9 2.916356e-10
27 8116610 8124262 NM_016614 TDP2 link to infopage 0.638845 2.255176e-13 7.815085e-9 2.894476e-10
28 8116610 8063873 NM_144498 OSBPL2 link to infopage 0.638375 2.377749e-13 8.239851e-9 2.942804e-10
29 8116610 7963054 NM_006009 TUBA1A link to infopage 0.637684 2.569742e-13 8.905182e-9 3.070753e-10
30 8116610 8048283 NM_000578 SLC11A1 link to infopage 0.636760 2.849740e-13 9.875490e-9 3.291830e-10
31 8116610 8092691 NM_001706 BCL6 link to infopage 0.636314 2.995472e-13 1.038051e-8 3.348551e-10
32 8116610 7996290 NM_052999 CMTM1 link to infopage 0.635268 3.365689e-13 1.166346e-8 3.644831e-10
33 8116610 8042637 NM_001130978 DYSF link to infopage 0.635181 3.398522e-13 1.177724e-8 3.568860e-10
34 8116610 8018761 NM_006456 ST6GALNAC2 link to infopage 0.634741 3.568877e-13 1.236759e-8 3.637525e-10
35 8116610 8031374 NM_002000 FCAR link to infopage 0.633655 4.025009e-13 1.394826e-8 3.985218e-10
36 8116610 7998637 NM_016332 SEPX1 link to infopage 0.632635 4.504523e-13 1.560997e-8 4.336104e-10
37 8116610 8065433 NM_020531 C20orf3 link to infopage 0.631661 5.013760e-13 1.737468e-8 4.695861e-10
38 8116610 8032834 NM_052972 LRG1 link to infopage 0.629927 6.061247e-13 2.100465e-8 5.527539e-10
39 8116610 7960865 NM_006931 SLC2A3 link to infopage 0.629738 6.187469e-13 2.144206e-8 5.497963e-10
40 8116610 7969145 NM_138450 ARL11 link to infopage 0.629572 6.300203e-13 2.183272e-8 5.458181e-10
41 8116610 8063351 NM_015266 SLC9A8 link to infopage 0.628710 6.919486e-13 2.397879e-8 5.848484e-10
42 8116610 8061668 NM_002110 HCK link to infopage 0.628408 7.150111e-13 2.477799e-8 5.899522e-10
43 8116610 8179322 NM_005345 HSPA1A link to infopage 0.627752 7.677404e-13 2.660528e-8 6.187273e-10
44 8116610 8016847 NM_005082 TRIM25 link to infopage 0.627141 8.201085e-13 2.842004e-8 6.459100e-10
45 8116610 8099967 NM_001098634 RBM47 link to infopage 0.626782 8.525585e-13 2.954456e-8 6.565458e-10
46 8116610 8018558 NM_004035 ACOX1 link to infopage 0.626679 8.620104e-13 2.987211e-8 6.493937e-10
47 8116610 8129627 NM_078625 VNN3 link to infopage 0.625225 1.007895e-12 3.492758e-8 7.431400e-10
48 8116610 8129637 NM_004665 VNN2 link to infopage 0.624871 1.046907e-12 3.627953e-8 7.558235e-10
49 8116610 7900922 NM_004047 ATP6V0B link to infopage 0.624245 1.119414e-12 3.879217e-8 7.916770e-10
50 8116610 8130556 NM_001024465 SOD2 link to infopage 0.623747 1.180645e-12 4.091408e-8 8.182816e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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