[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7356	8158269	NM_002540	ODF2		outer dense fiber of sperm tails 2

Fetching correlation data, please wait...
Getting list of correlations for id 7356.
Getting list of p-values for id 7356.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8158269	8086842	NM_002375	MAP4	0.483088	1.794019e-7	3.108497e-3	3.108497e-3
2	8158269	7994603	NM_001030288	SPN	0.462417	6.830807e-7	1.183574e-2	5.917870e-3
3	8158269	8073072	NM_152426	APOBEC3D	0.420257	8.071314e-6	1.398517e-1	4.661722e-2
4	8158269	8104378	NM_006999	PAPD7	0.407042	1.638977e-5	2.839855e-1	7.099637e-2
5	8158269	7912112	NM_018198	DNAJC11	0.396192	2.868078e-5	4.969518e-1	9.939036e-2
6	8158269	8073081	NM_145298	APOBEC3F	0.390210	3.872414e-5	6.709732e-1	1.118289e-1
7	8158269	8080100	NM_015106	RAD54L2	0.390127	3.888470e-5	6.737552e-1	9.625074e-2
8	8158269	8172088	NM_001123385	BCOR	0.389361	4.039230e-5	6.998773e-1	8.748467e-2
9	8158269	7939383	NM_024841	PRR5L	0.384180	5.211031e-5	9.029153e-1	1.003239e-1
10	8158269	8067040	NM_012340	NFATC2	0.383597	5.361168e-5	9.289296e-1	9.289296e-2
11	8158269	8150844	ENST00000413112		-0.382964	5.528607e-5	9.579418e-1	8.708561e-2
12	8158269	8054045	NM_199336	FAHD2B	0.380896	6.110787e-5	1.058816e+0	8.823467e-2
13	8158269	8060675	NM_021873	CDC25B	0.380793	6.141173e-5	1.064081e+0	8.185239e-2
14	8158269	7898750	NM_001083621	ZBTB40	0.380398	6.259173e-5	1.084527e+0	7.746621e-2
15	8158269	8134470	NM_003496	TRRAP	0.379807	6.439796e-5	1.115823e+0	7.438823e-2
16	8158269	8063723	NM_178457	ZNF831	0.379500	6.535354e-5	1.132381e+0	7.077380e-2
17	8158269	7996685	NM_014329	EDC4	0.376561	7.520888e-5	1.303144e+0	7.665555e-2
18	8158269	7984364	NM_005902	SMAD3	0.373401	8.734247e-5	1.513383e+0	8.407683e-2
19	8158269	8043725	NM_001079	ZAP70	0.372945	8.923501e-5	1.546175e+0	8.137763e-2
20	8158269	7963988	NM_003075	SMARCC2	0.370881	9.829595e-5	1.703174e+0	8.515870e-2
21	8158269	8000375	NM_001006634	ARHGAP17	0.370819	9.858145e-5	1.708121e+0	8.133909e-2
22	8158269	8065444	NM_032501	ACSS1	0.369448	1.050827e-4	1.820768e+0	8.276219e-2
23	8158269	8036613	NM_001533	HNRNPL	0.368322	1.107148e-4	1.918356e+0	8.340679e-2
24	8158269	8004485	NM_015670	SENP3	0.365823	1.242409e-4	2.152722e+0	8.969676e-2
25	8158269	8152764	NM_014751	MTSS1	0.365200	1.278422e-4	2.215121e+0	8.860484e-2
26	8158269	7959995	NM_015409	EP400	0.364914	1.295298e-4	2.244363e+0	8.632166e-2
27	8158269	8175947	NM_005334	HCFC1	0.364052	1.347342e-4	2.334540e+0	8.646446e-2
28	8158269	8014925	NM_014815	MED24	0.363522	1.380341e-4	2.391716e+0	8.541843e-2
29	8158269	7906613	NM_021181	SLAMF7	0.359645	1.645345e-4	2.850889e+0	9.830653e-2
30	8158269	7972888	BC008975	PCID2	0.359302	1.670921e-4	2.895206e+0	9.650685e-2
31	8158269	8012257	NM_000546	TP53	0.357345	1.824067e-4	3.160560e+0	1.019536e-1
32	8158269	8019765	NM_004309	ARHGDIA	0.357258	1.831135e-4	3.172808e+0	9.915025e-2
33	8158269	hsa-miR-19b			-0.357191	1.836644e-4	3.182354e+0	9.643496e-2
34	8158269	8163825	NM_005658	TRAF1	0.356900	1.860674e-4	3.223991e+0	9.482325e-2
35	8158269	7944223	NM_005933	MLL	0.354536	2.066764e-4	3.581082e+0	1.023166e-1
36	8158269	7978066	NM_003917	AP1G2	0.353594	2.154603e-4	3.733281e+0	1.037022e-1
37	8158269	8143028	NM_017812	CHCHD3	0.352718	2.239321e-4	3.880072e+0	1.048668e-1
38	8158269	8143684	NM_004911	PDIA4	0.351023	2.412183e-4	4.179590e+0	1.099892e-1
39	8158269	8093685	NM_002111	HTT	0.350965	2.418352e-4	4.190278e+0	1.074430e-1
40	8158269	8062545	NM_024855	ACTR5	0.350497	2.468318e-4	4.276855e+0	1.069214e-1
41	8158269	8084439	NM_182917	EIF4G1	0.350477	2.470483e-4	4.280606e+0	1.044050e-1
42	8158269	8123893	NM_005906	MAK	-0.350348	2.484454e-4	4.304813e+0	1.024955e-1
43	8158269	8171182	NM_005044	PRKX	0.349932	2.529857e-4	4.383484e+0	1.019415e-1
44	8158269	7994386	NM_007245	ATXN2L	0.349928	2.530350e-4	4.384337e+0	9.964402e-2
45	8158269	7952116	NM_182557	BCL9L	0.349827	2.541459e-4	4.403587e+0	9.785748e-2
46	8158269	7976726	NM_016337	EVL	0.349646	2.561635e-4	4.438545e+0	9.649010e-2
47	8158269	7906061	NM_152280	SYT11	0.349188	2.613143e-4	4.527792e+0	9.633600e-2
48	8158269	8025788	NM_001128849	SMARCA4	0.349153	2.617198e-4	4.534819e+0	9.447540e-2
49	8158269	8022320	ENST00000446615		0.349146	2.617978e-4	4.536170e+0	9.257490e-2
50	8158269	8044669	NM_013412	RABL2A	0.348213	2.726119e-4	4.723547e+0	9.447093e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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