[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7162	7962895	NM_016594	FKBP11		FK506 binding protein 11, 19 kDa

Fetching correlation data, please wait...
Getting list of correlations for id 7162.
Getting list of p-values for id 7162.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.095 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7962895	8072825	NM_013365	GGA1	0.500456	5.439314e-8	9.424699e-4	9.424699e-4
2	7962895	8010918	NM_001128159	VPS53	0.445899	1.869954e-6	3.240070e-2	1.620035e-2
3	7962895	8064208	NM_025219	DNAJC5	0.436456	3.249095e-6	5.629707e-2	1.876569e-2
4	7962895	8119034	NM_015695	BRPF3	0.435128	3.506951e-6	6.076493e-2	1.519123e-2
5	7962895	8048995	NM_030926	ITM2C	0.434888	3.555582e-6	6.160758e-2	1.232152e-2
6	7962895	8032718	NM_001348	DAPK3	0.434660	3.602317e-6	6.241734e-2	1.040289e-2
7	7962895	8104506	NM_007118	TRIO	0.433954	3.750933e-6	6.499241e-2	9.284630e-3
8	7962895	8027805	NM_003367	USF2	0.427448	5.420483e-6	9.392071e-2	1.174009e-2
9	7962895	8031122	NM_014516	CNOT3	0.422440	7.159183e-6	1.240472e-1	1.378302e-2
10	7962895	7898161	NM_024329	EFHD2	0.418798	8.740753e-6	1.514510e-1	1.514510e-2
11	7962895	7942342	NM_001567	INPPL1	0.418341	8.960820e-6	1.552641e-1	1.411492e-2
12	7962895	8034420	NM_000528	MAN2B1	0.414800	1.085283e-5	1.880470e-1	1.567059e-2
13	7962895	8053214	NM_181575	AUP1	0.408997	1.478666e-5	2.562084e-1	1.970834e-2
14	7962895	8076331	NM_016272	TOB2	0.408452	1.521833e-5	2.636879e-1	1.883485e-2
15	7962895	8093624	NM_001145856	SH3BP2	0.407387	1.609492e-5	2.788766e-1	1.859177e-2
16	7962895	8026830	NM_015122	FCHO1	0.401204	2.220142e-5	3.846839e-1	2.404275e-2
17	7962895	8016628	NM_032595	PPP1R9B	0.400691	2.279474e-5	3.949644e-1	2.323320e-2
18	7962895	7959251	NM_002562	P2RX7	0.399243	2.455273e-5	4.254252e-1	2.363473e-2
19	7962895	8159692	NM_152285	ARRDC1	0.399081	2.475751e-5	4.289734e-1	2.257755e-2
20	7962895	8164252	NM_170600	SH2D3C	0.398086	2.604716e-5	4.513191e-1	2.256595e-2
21	7962895	7994506	NM_032815	NFATC2IP	0.396659	2.800944e-5	4.853197e-1	2.311046e-2
22	7962895	7967794	NM_015114	ANKLE2	0.395932	2.906030e-5	5.035277e-1	2.288762e-2
23	7962895	8077612	NM_001025930	TTLL3	0.395334	2.995281e-5	5.189924e-1	2.256489e-2
24	7962895	8087640	NM_007182	RASSF1	0.394889	3.063438e-5	5.308020e-1	2.211675e-2
25	7962895	7998002	NM_152287	ZNF276	0.393873	3.224355e-5	5.586840e-1	2.234736e-2
26	7962895	8180179	NM_001141969	DAXX	0.390866	3.748121e-5	6.494368e-1	2.497834e-2
27	7962895	8065738	NM_000687	AHCY	0.389516	4.008263e-5	6.945117e-1	2.572266e-2
28	7962895	8007197	NM_017595	NKIRAS2	0.389439	4.023550e-5	6.971605e-1	2.489859e-2
29	7962895	7945101	NM_014026	DCPS	0.389406	4.030100e-5	6.982955e-1	2.407916e-2
30	7962895	8119153	NM_004373	COX6A1	0.388241	4.269403e-5	7.397595e-1	2.465865e-2
31	7962895	8048595	NM_013335	GMPPA	0.387516	4.424952e-5	7.667114e-1	2.473263e-2
32	7962895	7899134	NM_022778	CCDC21	0.387133	4.509065e-5	7.812857e-1	2.441518e-2
33	7962895	8042917	NM_001381	DOK1	0.386844	4.573670e-5	7.924798e-1	2.401454e-2
34	7962895	8040753	NM_017727	TMEM214	0.386551	4.639971e-5	8.039678e-1	2.364611e-2
35	7962895	8032057	NM_005035	POLRMT	0.384923	5.025483e-5	8.707655e-1	2.487901e-2
36	7962895	8072876	NM_002305	LGALS1	0.383808	5.306371e-5	9.194349e-1	2.553986e-2
37	7962895	7977511	NM_007110	TEP1	0.383124	5.485800e-5	9.505247e-1	2.568986e-2
38	7962895	8134992	NM_015908	SRRT	0.382927	5.538496e-5	9.596553e-1	2.525409e-2
39	7962895	8042811	NM_144993	TET3	0.382198	5.737891e-5	9.942044e-1	2.549242e-2
40	7962895	7976292	NM_024832	RIN3	0.382015	5.789017e-5	1.003063e+0	2.507658e-2
41	7962895	7941879	NM_198517	TBC1D10C	0.381336	5.982189e-5	1.036534e+0	2.528131e-2
42	7962895	8167165	NM_001654	ARAF	0.381186	6.025773e-5	1.044086e+0	2.485918e-2
43	7962895	8027398	NM_024310	PLEKHF1	0.380973	6.087965e-5	1.054862e+0	2.453167e-2
44	7962895	8039413	NM_014931	PPP6R1	0.379551	6.519276e-5	1.129595e+0	2.567261e-2
45	7962895	8011516	NM_174954	ATP2A3	0.378838	6.746406e-5	1.168950e+0	2.597666e-2
46	7962895	8032137	NM_001033026	C19orf6	0.377126	7.321328e-5	1.268566e+0	2.757753e-2
47	7962895	8164665	NM_005312	RAPGEF1	0.376604	7.505530e-5	1.300483e+0	2.766985e-2
48	7962895	8024282	NM_170711	DAZAP1	0.376025	7.714962e-5	1.336771e+0	2.784941e-2
49	7962895	8013860	NM_078471	MYO18A	0.376010	7.720381e-5	1.337710e+0	2.730021e-2
50	7962895	7991989	NM_138769	RHOT2	0.375977	7.732555e-5	1.339820e+0	2.679640e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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