[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
6298	8125734	NM_001141969	DAXX		death-domain associated protein
6581	8180179	NM_001141969	DAXX		death-domain associated protein
7165	8178991	NM_001141969	DAXX		death-domain associated protein

Fetching correlation data, please wait...
Getting list of correlations for id 6298.
Getting list of p-values for id 6298.
1 of 3 done.
Getting list of correlations for id 6581.
Getting list of p-values for id 6581.
2 of 3 done.
Getting list of correlations for id 7165.
Getting list of p-values for id 7165.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.293 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178991	8180179	NM_001141969	DAXX	0.968273	7.541750e-64	3.920277e-59	3.920277e-59
2	8180179	8178991	NM_001141969	DAXX	0.968273	7.541750e-64	3.920277e-59	1.960139e-59
3	8180179	8125734	NM_001141969	DAXX	0.963699	6.913048e-61	3.593472e-56	1.197824e-56
4	8125734	8180179	NM_001141969	DAXX	0.963699	6.913048e-61	3.593472e-56	8.983679e-57
5	8125734	8178991	NM_001141969	DAXX	0.942928	5.378863e-51	2.795987e-46	5.591973e-47
6	8178991	8125734	NM_001141969	DAXX	0.942928	5.378863e-51	2.795987e-46	4.659978e-47
7	8178991	8110803	NM_030782	CLPTM1L	0.714021	1.230082e-17	6.394090e-13	9.134415e-14
8	8125734	8110803	NM_030782	CLPTM1L	0.713483	1.334319e-17	6.935921e-13	8.669902e-14
9	8180179	8110803	NM_030782	CLPTM1L	0.711728	1.737556e-17	9.031990e-13	1.003554e-13
10	8178991	7913256	NM_005216	DDOST	0.706397	3.829719e-17	1.990726e-12	1.990726e-13
11	8178991	8119648	NM_057161	KLHDC3	0.704988	4.705170e-17	2.445794e-12	2.223449e-13
12	8180179	7913256	NM_005216	DDOST	0.699545	1.030923e-16	5.358841e-12	4.465701e-13
13	8125734	7904974	NR_003242	C1orf152	0.699085	1.100683e-16	5.721460e-12	4.401123e-13
14	8180179	7904974	NR_003242	C1orf152	0.690068	3.876130e-16	2.014851e-11	1.439179e-12
15	8180179	7949792	NM_005608	PTPRCAP	0.684309	8.460323e-16	4.397760e-11	2.931840e-12
16	8178991	8004030	NM_015528	RNF167	0.682577	1.066014e-15	5.541246e-11	3.463279e-12
17	8178991	7904974	NR_003242	C1orf152	0.680533	1.397665e-15	7.265200e-11	4.273647e-12
18	8180179	8119648	NM_057161	KLHDC3	0.678114	1.920451e-15	9.982696e-11	5.545942e-12
19	8178991	8026548	NM_001130524	AP1M1	0.677536	2.070895e-15	1.076472e-10	5.665643e-12
20	8178991	7949792	NM_005608	PTPRCAP	0.671697	4.396997e-15	2.285603e-10	1.142802e-11
21	8180179	8011759	NM_005022	PFN1	0.669452	5.846585e-15	3.039113e-10	1.447197e-11
22	8125734	7913256	NM_005216	DDOST	0.668442	6.641302e-15	3.452215e-10	1.569189e-11
23	8180179	7998033	NM_014972	TCF25	0.668144	6.895285e-15	3.584238e-10	1.558364e-11
24	8178991	8030007	NM_001425	EMP3	0.667639	7.346420e-15	3.818742e-10	1.591143e-11
25	8178991	8027621	NM_000175	GPI	0.667398	7.571847e-15	3.935922e-10	1.574369e-11
26	8178991	7906235	NM_005973	PRCC	0.666181	8.817390e-15	4.583368e-10	1.762834e-11
27	8178991	7998033	NM_014972	TCF25	0.664839	1.042046e-14	5.416660e-10	2.006170e-11
28	8180179	7948696	NM_004739	MTA2	0.664754	1.053123e-14	5.474239e-10	1.955085e-11
29	8180179	8004030	NM_015528	RNF167	0.663476	1.233726e-14	6.413031e-10	2.211390e-11
30	8178991	7928369	NM_004922	SEC24C	0.662968	1.313577e-14	6.828103e-10	2.276034e-11
31	8180179	7965480	NM_002629	PGAM1	0.662354	1.416592e-14	7.363585e-10	2.375350e-11
32	8125734	8026548	NM_001130524	AP1M1	0.661743	1.527184e-14	7.938454e-10	2.480767e-11
33	8178991	8069057	NR_024108	PFKL	0.660136	1.858747e-14	9.661951e-10	2.927864e-11
34	8180179	8027621	NM_000175	GPI	0.658950	2.147394e-14	1.116237e-9	3.283050e-11
35	8125734	7965480	NM_002629	PGAM1	0.657907	2.436877e-14	1.266713e-9	3.619180e-11
36	8125734	7949792	NM_005608	PTPRCAP	0.656253	2.974332e-14	1.546087e-9	4.294687e-11
37	8180179	8116020	NM_006816	LMAN2	0.655552	3.235571e-14	1.681882e-9	4.545627e-11
38	8180179	8173729	NM_001029891	PGAM4	0.655177	3.384187e-14	1.759134e-9	4.629301e-11
39	8180179	8176282	NM_001029891	PGAM4	0.655177	3.384187e-14	1.759134e-9	4.510601e-11
40	8125734	7948696	NM_004739	MTA2	0.655049	3.436616e-14	1.786388e-9	4.465969e-11
41	8125734	8176282	NM_001029891	PGAM4	0.654773	3.551664e-14	1.846191e-9	4.502904e-11
42	8125734	8173729	NM_001029891	PGAM4	0.654773	3.551664e-14	1.846191e-9	4.395692e-11
43	8178991	8176282	NM_001029891	PGAM4	0.654132	3.834254e-14	1.993084e-9	4.635078e-11
44	8178991	8173729	NM_001029891	PGAM4	0.654132	3.834254e-14	1.993084e-9	4.529735e-11
45	8180179	8030007	NM_001425	EMP3	0.653762	4.006889e-14	2.082821e-9	4.628491e-11
46	8125734	7929624	NM_002629	PGAM1	0.652824	4.479834e-14	2.328663e-9	5.062310e-11
47	8125734	8119648	NM_057161	KLHDC3	0.651463	5.262592e-14	2.735548e-9	5.820315e-11
48	8178991	7941927	NM_003977	AIP	0.650933	5.601987e-14	2.911969e-9	6.066602e-11
49	8178991	7948696	NM_004739	MTA2	0.650474	5.913118e-14	3.073698e-9	6.272853e-11
50	8180179	7929624	NM_002629	PGAM1	0.650290	6.041972e-14	3.140677e-9	6.281355e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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