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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6947 8139276 NM_000290 PGAM2 link to infopage phosphoglycerate mutase 2 (muscle)

Fetching correlation data, please wait...
Getting list of correlations for id 6947.
Getting list of p-values for id 6947.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8139276 8076747 AK123383 LOC642648 link to infopage 0.602668 1.031015e-11 1.786439e-7 1.786439e-7
2 8139276 8116195 NM_173465 COL23A1 link to infopage 0.601987 1.102821e-11 1.910858e-7 9.554290e-8
3 8139276 7929649 NM_024954 UBTD1 link to infopage 0.597476 1.716452e-11 2.974097e-7 9.913655e-8
4 8139276 8017488 NM_022640 CSH1 link to infopage 0.595537 2.071607e-11 3.589473e-7 8.973683e-8
5 8139276 7964535 NM_000785 CYP27B1 link to infopage 0.592521 2.768459e-11 4.796908e-7 9.593817e-8
6 8139276 7935528 NM_003015 SFRP5 link to infopage 0.584185 6.076241e-11 1.052830e-6 1.754717e-7
7 8139276 7992302 NM_020825 CRAMP1L link to infopage 0.583142 6.693679e-11 1.159814e-6 1.656877e-7
8 8139276 7940377 NM_017870 TMEM132A link to infopage 0.582225 7.285990e-11 1.262443e-6 1.578054e-7
9 8139276 7931140 NR_003570 FLJ46361 link to infopage 0.581409 7.855826e-11 1.361179e-6 1.512421e-7
10 8139276 8098732 NM_033178 DUX4 link to infopage 0.578041 1.069351e-10 1.852865e-6 1.852865e-7
11 8139276 8159142 NM_000093 COL5A1 link to infopage 0.577377 1.135933e-10 1.968230e-6 1.789300e-7
12 8139276 8007259 ENST00000225928 link to infopage 0.576918 1.184228e-10 2.051912e-6 1.709926e-7
13 8139276 8153704 NM_031309 SCRT1 link to infopage 0.575209 1.382249e-10 2.395022e-6 1.842325e-7
14 8139276 8018236 NM_024417 FDXR link to infopage 0.574147 1.520986e-10 2.635412e-6 1.882437e-7
15 8139276 8104122 NM_033178 DUX4 link to infopage 0.573794 1.569904e-10 2.720173e-6 1.813448e-7
16 8139276 7905492 NM_178433 LCE3B link to infopage 0.571812 1.874520e-10 3.247980e-6 2.029987e-7
17 8139276 7952011 NM_004588 SCN2B link to infopage 0.570694 2.070649e-10 3.587813e-6 2.110478e-7
18 8139276 7984408 NM_145160 MAP2K5 link to infopage -0.569020 2.401612e-10 4.161274e-6 2.311819e-7
19 8139276 7944530 NM_178507 OAF link to infopage 0.568596 2.493107e-10 4.319806e-6 2.273582e-7
20 8139276 8109226 NM_001804 CDX1 link to infopage 0.568531 2.507543e-10 4.344821e-6 2.172410e-7
21 8139276 8026763 NM_198580 SLC27A1 link to infopage 0.567174 2.825390e-10 4.895552e-6 2.331215e-7
22 8139276 8067743 NM_025224 ZBTB46 link to infopage 0.567100 2.844033e-10 4.927856e-6 2.239934e-7
23 8139276 8009526 NM_001050 SSTR2 link to infopage 0.566520 2.992212e-10 5.184606e-6 2.254177e-7
24 8139276 8027040 NM_012109 TMEM59L link to infopage 0.565541 3.259847e-10 5.648336e-6 2.353473e-7
25 8139276 8159624 BC052297 C9orf169 link to infopage 0.565513 3.267796e-10 5.662110e-6 2.264844e-7
26 8139276 8070933 NM_006657 FTCD link to infopage 0.563413 3.922914e-10 6.797233e-6 2.614321e-7
27 8139276 8098725 NM_033178 DUX4 link to infopage 0.563210 3.992583e-10 6.917949e-6 2.562203e-7
28 8139276 8059989 NM_018645 HES6 link to infopage 0.563152 4.012455e-10 6.952381e-6 2.482993e-7
29 8139276 8098740 NM_033178 DUX4 link to infopage 0.561655 4.566597e-10 7.912543e-6 2.728463e-7
30 8139276 8164328 NM_173492 PIP5KL1 link to infopage 0.560219 5.166889e-10 8.952669e-6 2.984223e-7
31 8139276 8084726 NM_153708 RTP1 link to infopage 0.559874 5.321923e-10 9.221296e-6 2.974612e-7
32 8139276 8144643 NM_002052 GATA4 link to infopage 0.559331 5.575100e-10 9.659976e-6 3.018742e-7
33 8139276 7901913 NM_012183 FOXD3 link to infopage 0.559179 5.648116e-10 9.786490e-6 2.965603e-7
34 8139276 8176986 NM_013239 PPP2R3B link to infopage 0.559026 5.722434e-10 9.915262e-6 2.916253e-7
35 8139276 8094408 NM_013367 ANAPC4 link to infopage -0.558929 5.770080e-10 9.997818e-6 2.856519e-7
36 8139276 8051061 NM_003353 UCN link to infopage 0.558854 5.807173e-10 1.006209e-5 2.795024e-7
37 8139276 7997582 NM_021197 WFDC1 link to infopage 0.558814 5.827097e-10 1.009661e-5 2.728814e-7
38 8139276 8005695 NR_002211 MEIS3P1 link to infopage 0.558231 6.124016e-10 1.061108e-5 2.792390e-7
39 8139276 7999423 NM_003745 SOCS1 link to infopage 0.558058 6.214763e-10 1.076832e-5 2.761107e-7
40 8139276 7987325 NM_014691 AQR link to infopage -0.557895 6.301607e-10 1.091879e-5 2.729698e-7
41 8139276 7945445 BC039077 C11orf35 link to infopage 0.557480 6.528307e-10 1.131160e-5 2.758926e-7
42 8139276 7931662 NM_033178 DUX4 link to infopage 0.556944 6.832323e-10 1.183837e-5 2.818659e-7
43 8139276 7931668 NM_033178 DUX4 link to infopage 0.556944 6.832323e-10 1.183837e-5 2.753108e-7
44 8139276 7931656 NM_033178 DUX4 link to infopage 0.556944 6.832323e-10 1.183837e-5 2.690538e-7
45 8139276 7931659 NM_033178 DUX4 link to infopage 0.556944 6.832323e-10 1.183837e-5 2.630748e-7
46 8139276 7931671 NM_033178 DUX4 link to infopage 0.556944 6.832323e-10 1.183837e-5 2.573558e-7
47 8139276 7946728 NM_148976 PSMA1 link to infopage -0.556822 6.903716e-10 1.196207e-5 2.545121e-7
48 8139276 8064031 NM_139317 BIRC7 link to infopage 0.556719 6.963782e-10 1.206615e-5 2.513780e-7
49 8139276 8159808 NM_207305 FOXD4 link to infopage 0.555969 7.420810e-10 1.285804e-5 2.624089e-7
50 8139276 8027556 NM_002333 LRP3 link to infopage 0.555911 7.457252e-10 1.292118e-5 2.584236e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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