[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5888	7943919	NM_017868	TTC12		tetratricopeptide repeat domain 12

Fetching correlation data, please wait...
Getting list of correlations for id 5888.
Getting list of p-values for id 5888.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7943919	8002802	NM_030581	WDR59	0.560332	5.116729e-10	8.865757e-6	8.865757e-6
2	7943919	7996772	NM_003983	SLC7A6	0.553705	8.980381e-10	1.556031e-5	7.780153e-6
3	7943919	8102311	NM_001226	CASP6	0.543076	2.158434e-9	3.739918e-5	1.246639e-5
4	7943919	7924636	NM_014698	TMEM63A	0.537908	3.270105e-9	5.666110e-5	1.416528e-5
5	7943919	7910752	NM_000254	MTR	0.537273	3.439654e-9	5.959889e-5	1.191978e-5
6	7943919	7933772	NM_020987	ANK3	0.530553	5.836241e-9	1.011245e-4	1.685409e-5
7	7943919	8057056	NM_133378	TTN	0.525799	8.425768e-9	1.459933e-4	2.085618e-5
8	7943919	8047692	NM_005214	CTLA4	0.524139	9.565263e-9	1.657373e-4	2.071716e-5
9	7943919	7952601	NM_001143820	ETS1	0.521591	1.160676e-8	2.011103e-4	2.234559e-5
10	7943919	8128138	NM_014611	MDN1	0.521227	1.193016e-8	2.067139e-4	2.067139e-5
11	7943919	7998174	NM_018032	LUC7L	0.518035	1.516256e-8	2.627216e-4	2.388378e-5
12	7943919	8047677	NM_006139	CD28	0.517715	1.552920e-8	2.690744e-4	2.242286e-5
13	7943919	8169263	NM_182607	VSIG1	0.514363	1.991886e-8	3.451341e-4	2.654878e-5
14	7943919	8005157	NM_004278	PIGL	0.510298	2.684239e-8	4.650982e-4	3.322130e-5
15	7943919	8112865	NM_178276	SERINC5	0.508866	2.978758e-8	5.161294e-4	3.440862e-5
16	7943919	8141490	NR_003613	PMS2L1	0.508618	3.032940e-8	5.255176e-4	3.284485e-5
17	7943919	8075483	NM_052880	PIK3IP1	0.508244	3.116202e-8	5.399443e-4	3.176143e-5
18	7943919	8133549	NM_001003795	GTF2IRD2B	0.507617	3.260883e-8	5.650132e-4	3.138962e-5
19	7943919	8140170	NM_173537	GTF2IRD2	0.504345	4.125466e-8	7.148195e-4	3.762208e-5
20	7943919	8041995	NM_003128	SPTBN1	0.502222	4.799541e-8	8.316164e-4	4.158082e-5
21	7943919	8066303	NM_032221	CHD6	0.500294	5.501698e-8	9.532793e-4	4.539425e-5
22	7943919	8089478	NM_001008756	GCET2	0.499915	5.650844e-8	9.791218e-4	4.450553e-5
23	7943919	8088458	NM_002012	FHIT	0.497809	6.552129e-8	1.135287e-3	4.936033e-5
24	7943919	7972487	NM_015296	DOCK9	0.497312	6.784370e-8	1.175528e-3	4.898033e-5
25	7943919	8010949	NM_016080	GLOD4	0.497205	6.835043e-8	1.184308e-3	4.737231e-5
26	7943919	8110408	NM_032361	THOC3	0.492650	9.376448e-8	1.624657e-3	6.248682e-5
27	7943919	7955450	NM_015416	LETMD1	0.492464	9.497120e-8	1.645566e-3	6.094689e-5
28	7943919	7979916	NM_018373	SYNJ2BP	0.491929	9.853482e-8	1.707313e-3	6.097546e-5
29	7943919	8069880	NM_003253	TIAM1	0.490922	1.055840e-7	1.829453e-3	6.308460e-5
30	7943919	8078173	NM_138381	OXNAD1	0.490659	1.074981e-7	1.862620e-3	6.208735e-5
31	7943919	7936463	NM_002313	ABLIM1	0.489838	1.137102e-7	1.970257e-3	6.355668e-5
32	7943919	7962811	NM_017822	C12orf41	0.488851	1.216238e-7	2.107376e-3	6.585549e-5
33	7943919	7973298	X58769	TRAV8-3	0.488825	1.218387e-7	2.111099e-3	6.397270e-5
34	7943919	8007904	NM_004287	GOSR2	0.488550	1.241385e-7	2.150948e-3	6.326318e-5
35	7943919	8075430	NM_014941	MORC2	0.487666	1.318149e-7	2.283958e-3	6.525593e-5
36	7943919	8005471	NM_001031	RPS28	0.485884	1.487001e-7	2.576527e-3	7.157019e-5
37	7943919	8027233	NM_033204	ZNF101	0.484205	1.664691e-7	2.884409e-3	7.795701e-5
38	7943919	7950743	NM_014488	RAB30	0.483833	1.706734e-7	2.957259e-3	7.782260e-5
39	7943919	7905754	NM_020452	ATP8B2	0.483663	1.726319e-7	2.991193e-3	7.669724e-5
40	7943919	8102950	NM_003866	INPP4B	0.482481	1.868194e-7	3.237020e-3	8.092550e-5
41	7943919	8139947	NM_032158	NSUN5P2	0.480209	2.172682e-7	3.764606e-3	9.181965e-5
42	7943919	7925130	NM_005646	TARBP1	0.479279	2.310481e-7	4.003371e-3	9.531836e-5
43	7943919	7901804	NM_176877	INADL	0.479090	2.339480e-7	4.053618e-3	9.427018e-5
44	7943919	7923917	NM_005449	FAIM3	0.478871	2.373472e-7	4.112515e-3	9.346625e-5
45	7943919	8009301	NM_002737	PRKCA	0.478385	2.450725e-7	4.246372e-3	9.436382e-5
46	7943919	7901219	NM_199044	NSUN4	0.478300	2.464444e-7	4.270142e-3	9.282918e-5
47	7943919	7968898	BC039586	KIAA1704	0.477799	2.547021e-7	4.413224e-3	9.389838e-5
48	7943919	8060196	NM_182501	MTERFD2	0.477429	2.609750e-7	4.521914e-3	9.420654e-5
49	7943919	8174692	NM_145799	SEPT6	0.477099	2.666876e-7	4.620896e-3	9.430400e-5
50	7943919	7914617	NM_013411	AK2	0.477030	2.678952e-7	4.641821e-3	9.283642e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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