[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3788	7942679	NM_018367	ACER3		alkaline ceramidase 3

Fetching correlation data, please wait...
Getting list of correlations for id 3788.
Getting list of p-values for id 3788.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7942679	8168691	NM_006729	DIAPH2	0.687776	5.299525e-16	9.182488e-12	9.182488e-12
2	7942679	8049670	NM_002081	GPC1	-0.683875	8.966344e-16	1.553598e-11	7.767992e-12
3	7942679	7927936	NM_004728	DDX21	0.676722	2.302560e-15	3.989646e-11	1.329882e-11
4	7942679	8088001	NM_003157	NEK4	0.672105	4.174041e-15	7.232361e-11	1.808090e-11
5	7942679	7918188	NM_013386	SLC25A24	0.668344	6.723859e-15	1.165043e-10	2.330086e-11
6	7942679	8106633	NM_002439	MSH3	0.656905	2.750128e-14	4.765147e-10	7.941911e-11
7	7942679	8099897	NM_003359	UGDH	0.655651	3.197538e-14	5.540374e-10	7.914821e-11
8	7942679	8171867	NM_139058	ARX	-0.655273	3.345530e-14	5.796800e-10	7.246000e-11
9	7942679	7917707	NM_005665	EVI5	0.652314	4.758720e-14	8.245435e-10	9.161594e-11
10	7942679	7930996	NM_018117	WDR11	0.651783	5.067208e-14	8.779952e-10	8.779952e-11
11	7942679	7992447	NM_004209	SYNGR3	-0.650232	6.083931e-14	1.054163e-9	9.583297e-11
12	7942679	7970704	NM_152912	MTIF3	0.648097	7.810834e-14	1.353383e-9	1.127819e-10
13	7942679	7905020	NM_000798	DRD5	-0.646950	8.924992e-14	1.546433e-9	1.189564e-10
14	7942679	8039504	NM_001145176	SHISA7	-0.642515	1.487325e-13	2.577089e-9	1.840778e-10
15	7942679	8133335	NM_003508	FZD9	-0.642265	1.530321e-13	2.651587e-9	1.767725e-10
16	7942679	8060505	NM_001110514	EBF4	-0.641703	1.631523e-13	2.826941e-9	1.766838e-10
17	7942679	7969228	NM_001004127	ALG11	0.641489	1.671713e-13	2.896577e-9	1.703869e-10
18	7942679	7949619	NM_001532	SLC29A2	-0.641156	1.736239e-13	3.008381e-9	1.671323e-10
19	7942679	8011188	ENST00000330676		-0.640725	1.823446e-13	3.159485e-9	1.662887e-10
20	7942679	8033159	NM_004158	PSPN	-0.640083	1.961035e-13	3.397886e-9	1.698943e-10
21	7942679	8078435	NM_001039111	TRIM71	-0.639882	2.006065e-13	3.475910e-9	1.655195e-10
22	7942679	8013259	ENST00000300983		-0.638765	2.275520e-13	3.942793e-9	1.792179e-10
23	7942679	8071989	NM_004076	CRYBB3	-0.637502	2.622528e-13	4.544055e-9	1.975676e-10
24	7942679	8099395	NM_004249	RAB28	0.637290	2.685739e-13	4.653580e-9	1.938992e-10
25	7942679	8050658	NM_017552	ATAD2B	0.635572	3.253931e-13	5.638087e-9	2.255235e-10
26	7942679	8052269	NM_001135597	CCDC88A	0.635073	3.439602e-13	5.959799e-9	2.292230e-10
27	7942679	8128572	NM_002726	PREP	0.633842	3.942347e-13	6.830905e-9	2.529965e-10
28	7942679	7907893	NM_001531	MR1	0.633287	4.192119e-13	7.263685e-9	2.594173e-10
29	7942679	8024038	NM_001700	AZU1	-0.632827	4.410037e-13	7.641271e-9	2.634921e-10
30	7942679	8172715	AY730278	CENPVL1	-0.632707	4.468696e-13	7.742910e-9	2.580970e-10
31	7942679	8167652	AY730278	CENPVL1	-0.632707	4.468696e-13	7.742910e-9	2.497713e-10
32	7942679	8094625	NM_015990	KLHL5	0.632433	4.606004e-13	7.980823e-9	2.494007e-10
33	7942679	8003560	NM_024043	DBNDD1	-0.632305	4.671356e-13	8.094059e-9	2.452745e-10
34	7942679	8150928	NM_003580	NSMAF	0.632219	4.715471e-13	8.170497e-9	2.403087e-10
35	7942679	8047606	NM_001099273	NBEAL1	0.630870	5.467557e-13	9.473636e-9	2.706753e-10
36	7942679	8141107	NM_001160210	SLC25A13	0.630867	5.469438e-13	9.476896e-9	2.632471e-10
37	7942679	8111360	NM_016107	ZFR	0.630815	5.500901e-13	9.531411e-9	2.576057e-10
38	7942679	8163972	NM_001100588	RC3H2	0.630098	5.948860e-13	1.030759e-8	2.712524e-10
39	7942679	7922309	NM_003762	VAMP4	0.629854	6.109972e-13	1.058675e-8	2.714551e-10
40	7942679	8134180	NM_019004	ANKIB1	0.629797	6.147592e-13	1.065193e-8	2.662983e-10
41	7942679	7998700	NM_001009944	PKD1	-0.629486	6.359567e-13	1.101922e-8	2.687615e-10
42	7942679	8146717	NM_013257	SGK3	0.627872	7.577579e-13	1.312967e-8	3.126112e-10
43	7942679	8058552	NM_005896	IDH1	0.627549	7.847578e-13	1.359750e-8	3.162209e-10
44	7942679	8154254	NM_020829	KIAA1432	0.626364	8.918479e-13	1.545305e-8	3.512056e-10
45	7942679	8031084	NM_031895	CACNG8	-0.625649	9.630911e-13	1.668748e-8	3.708329e-10
46	7942679	7980940	NM_004993	ATXN3	0.625647	9.633088e-13	1.669125e-8	3.628533e-10
47	7942679	7955112	NM_181788	H1FNT	-0.625383	9.910105e-13	1.717124e-8	3.653455e-10
48	7942679	7927786	NM_001001330	REEP3	0.625283	1.001660e-12	1.735576e-8	3.615783e-10
49	7942679	8097704	NM_018241	TMEM184C	0.625022	1.030109e-12	1.784869e-8	3.642591e-10
50	7942679	7958800	NM_003668	MAPKAPK5	0.624914	1.042090e-12	1.805629e-8	3.611257e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation