[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7326	8088001	NM_003157	NEK4		NIMA (never in mitosis gene a)-related kinase 4

Fetching correlation data, please wait...
Getting list of correlations for id 7326.
Getting list of p-values for id 7326.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8088001	8168691	NM_006729	DIAPH2	0.799315	1.610394e-24	2.790330e-20	2.790330e-20
2	8088001	7971820	NM_016075	VPS36	0.792287	7.816754e-24	1.354409e-19	6.772045e-20
3	8088001	7903519	NM_018061	PRPF38B	0.792126	8.099785e-24	1.403450e-19	4.678166e-20
4	8088001	8077513	NM_015453	THUMPD3	0.790686	1.110823e-23	1.924723e-19	4.811807e-20
5	8088001	8087951	NM_018165	PBRM1	0.790588	1.134705e-23	1.966103e-19	3.932206e-20
6	8088001	8083630	NM_024996	GFM1	0.782169	6.848684e-23	1.186671e-18	1.977786e-19
7	8088001	8063242	NM_006420	ARFGEF2	0.780206	1.029602e-22	1.783991e-18	2.548559e-19
8	8088001	8146243	NM_032410	HOOK3	0.778063	1.599150e-22	2.770846e-18	3.463558e-19
9	8088001	8147483	NM_178812	MTDH	0.776165	2.352206e-22	4.075667e-18	4.528519e-19
10	8088001	8137330	ENST00000356058		-0.773849	3.748274e-22	6.494634e-18	6.494634e-19
11	8088001	7927936	NM_004728	DDX21	0.772093	5.316016e-22	9.211061e-18	8.373692e-19
12	8088001	7944285	NM_001655	ARCN1	0.770971	6.636422e-22	1.149893e-17	9.582440e-19
13	8088001	8163275	NM_001080398	KIAA0368	0.770878	6.758633e-22	1.171068e-17	9.008218e-19
14	8088001	8023382	NM_003927	MBD2	0.770124	7.838454e-22	1.358169e-17	9.701207e-19
15	8088001	8107474	NM_005509	DMXL1	0.768714	1.032658e-21	1.789287e-17	1.192858e-18
16	8088001	7929168	NM_025235	TNKS2	0.765911	1.775844e-21	3.077004e-17	1.923128e-18
17	8088001	8130038	NM_001042683	SHPRH	0.765750	1.831886e-21	3.174109e-17	1.867123e-18
18	8088001	8039605	NM_001005850	ZNF835	-0.764163	2.481135e-21	4.299063e-17	2.388368e-18
19	8088001	7974473	NM_017943	FBXO34	0.763961	2.578437e-21	4.467657e-17	2.351398e-18
20	8088001	8134180	NM_019004	ANKIB1	0.763107	3.031919e-21	5.253406e-17	2.626703e-18
21	8088001	8114455	NM_004134	HSPA9	0.762941	3.129191e-21	5.421949e-17	2.581881e-18
22	8088001	8107942	NM_005732	RAD50	0.762882	3.164411e-21	5.482976e-17	2.492262e-18
23	8088001	8108015	NM_002154	HSPA4	0.762758	3.238997e-21	5.612210e-17	2.440092e-18
24	8088001	7969935	NM_000123	ERCC5	0.762657	3.301418e-21	5.720366e-17	2.383486e-18
25	8088001	7985166	NM_004136	IREB2	0.762301	3.531631e-21	6.119256e-17	2.447703e-18
26	8088001	8023481	NM_004539	NARS	0.761961	3.765231e-21	6.524016e-17	2.509237e-18
27	8088001	8157700	NM_012197	RABGAP1	0.761698	3.956381e-21	6.855222e-17	2.538971e-18
28	8088001	7933075	NM_031866	FZD8	-0.761466	4.132436e-21	7.160271e-17	2.557240e-18
29	8088001	8052762	NM_002056	GFPT1	0.761241	4.311359e-21	7.470293e-17	2.575963e-18
30	8088001	8046213	NM_172070	UBR3	0.761170	4.368878e-21	7.569955e-17	2.523318e-18
31	8088001	8091190	NM_001184	ATR	0.758391	7.334113e-21	1.270782e-16	4.099296e-18
32	8088001	8065327	NM_033176	NKX2-4	-0.757739	8.272872e-21	1.433441e-16	4.479502e-18
33	8088001	7926565	NM_004641	MLLT10	0.757302	8.967674e-21	1.553829e-16	4.708572e-18
34	8088001	7967386	NM_022782	MPHOSPH9	0.757079	9.342702e-21	1.618810e-16	4.761206e-18
35	8088001	7989253	NM_024755	SLTM	0.756570	1.025913e-20	1.777600e-16	5.078858e-18
36	8088001	8060505	NM_001110514	EBF4	-0.756445	1.049776e-20	1.818947e-16	5.052630e-18
37	8088001	7926021	NM_001145547	RBM17	0.755936	1.152377e-20	1.996723e-16	5.396550e-18
38	8088001	8154531	NM_017925	DENND4C	0.755773	1.187278e-20	2.057196e-16	5.413674e-18
39	8088001	8050658	NM_017552	ATAD2B	0.755755	1.191008e-20	2.063659e-16	5.291434e-18
40	8088001	8091562	NM_020865	DHX36	0.755685	1.206359e-20	2.090259e-16	5.225647e-18
41	8088001	8082688	NM_015268	DNAJC13	0.755323	1.288850e-20	2.233191e-16	5.446808e-18
42	8088001	7982957	NM_001080541	MGA	0.755188	1.321097e-20	2.289065e-16	5.450154e-18
43	8088001	7980463	NM_012245	SNW1	0.753983	1.644578e-20	2.849561e-16	6.626886e-18
44	8088001	8011011	NR_024058	YWHAE	0.753876	1.676687e-20	2.905196e-16	6.602718e-18
45	8088001	8055021	NM_017969	IWS1	0.753688	1.734652e-20	3.005631e-16	6.679181e-18
46	8088001	8123524	NM_018303	EXOC2	0.753501	1.794522e-20	3.109368e-16	6.759496e-18
47	8088001	7934812	NM_015045	WAPAL	0.752893	2.002608e-20	3.469919e-16	7.382806e-18
48	8088001	8154316	NM_152896	UHRF2	0.752857	2.015672e-20	3.492555e-16	7.276156e-18
49	8088001	7942839	NM_015885	PCF11	0.752631	2.099505e-20	3.637812e-16	7.424106e-18
50	8088001	8086077	NM_015097	CLASP2	0.752214	2.263046e-20	3.921180e-16	7.842361e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation