[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5187	7961386	NM_018654	GPRC5D		G protein-coupled receptor, family C, group 5, member D

Fetching correlation data, please wait...
Getting list of correlations for id 5187.
Getting list of p-values for id 5187.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7961386	8001102	ENST00000438532		0.535281	4.028116e-9	6.979517e-5	6.979517e-5
2	7961386	8124388	NM_003537	HIST1H3B	0.522723	1.065265e-8	1.845785e-4	9.228926e-5
3	7961386	8116559	NM_002460	IRF4	0.505126	3.901292e-8	6.759768e-4	2.253256e-4
4	7961386	8062766	NM_002466	MYBL2	0.479147	2.330737e-7	4.038469e-3	1.009617e-3
5	7961386	7937020	NM_002417	MKI67	0.479143	2.331349e-7	4.039528e-3	8.079056e-4
6	7961386	8001104	ENST00000390603		0.478983	2.355998e-7	4.082238e-3	6.803731e-4
7	7961386	7994109	NM_005030	PLK1	0.478444	2.441196e-7	4.229860e-3	6.042658e-4
8	7961386	8043474	ENST00000390249		0.476514	2.770984e-7	4.801284e-3	6.001605e-4
9	7961386	7995263	AF067420	IGHA1	0.467947	4.817799e-7	8.347800e-3	9.275333e-4
10	7961386	8114511	NM_016459	MGC29506	0.467602	4.924818e-7	8.533231e-3	8.533231e-4
11	7961386	7981722	AK128476	IGHA1	0.458537	8.695084e-7	1.506597e-2	1.369634e-3
12	7961386	8034304	NM_001111035	ACP5	0.456584	9.807266e-7	1.699305e-2	1.416088e-3
13	7961386	8007302	NM_001070	TUBG1	0.445049	1.966619e-6	3.407561e-2	2.621201e-3
14	7961386	8124527	NM_005322	HIST1H1B	0.442955	2.225367e-6	3.855893e-2	2.754210e-3
15	7961386	7981724	BC021276	IGHD	0.439937	2.655463e-6	4.601122e-2	3.067414e-3
16	7961386	8117594	NM_003521	HIST1H2BM	0.438854	2.828256e-6	4.900520e-2	3.062825e-3
17	7961386	8043433	BC022362	IGKC	0.431751	4.252614e-6	7.368504e-2	4.334414e-3
18	7961386	7981601	AK301335	IGHV4-31	0.429838	4.738786e-6	8.210895e-2	4.561608e-3
19	7961386	8043438	BC093097	IGKC	0.428595	5.082529e-6	8.806498e-2	4.634999e-3
20	7961386	8013500	NM_003876	TMEM11	0.425994	5.879051e-6	1.018663e-1	5.093316e-3
21	7961386	7981730	AB001736	IGLJ3	0.423691	6.681294e-6	1.157668e-1	5.512704e-3
22	7961386	7898998	NM_016124	RHD	0.423643	6.699161e-6	1.160764e-1	5.276198e-3
23	7961386	7996837	NM_004360	CDH1	0.422877	6.988638e-6	1.210921e-1	5.264875e-3
24	7961386	8143803	NM_173681	ATG9B	0.421649	7.478131e-6	1.295736e-1	5.398899e-3
25	7961386	8029489	NM_005581	BCAM	0.421177	7.674483e-6	1.329758e-1	5.319031e-3
26	7961386	7981737	AF067420	IGHA1	0.418440	8.912974e-6	1.544351e-1	5.939812e-3
27	7961386	8161568	ENST00000457995		0.417992	9.132720e-6	1.582426e-1	5.860838e-3
28	7961386	7963965	NM_032345	WIBG	0.415839	1.026226e-5	1.778142e-1	6.350508e-3
29	7961386	8034578	NM_006563	KLF1	0.412275	1.242513e-5	2.152902e-1	7.423799e-3
30	7961386	8143534	NM_000420	KEL	0.412064	1.256571e-5	2.177260e-1	7.257535e-3
31	7961386	8161580	ENST00000457995		0.411497	1.295102e-5	2.244024e-1	7.238786e-3
32	7961386	8043459	ENST00000390273		0.410608	1.357811e-5	2.352679e-1	7.352121e-3
33	7961386	7981740	BC073771	IGHA1	0.407334	1.614017e-5	2.796608e-1	8.474570e-3
34	7961386	7981720	AK301358	IGHG1	0.405216	1.803263e-5	3.124514e-1	9.189746e-3
35	7961386	8074734	AK128837	LOC284861	0.404280	1.893365e-5	3.280633e-1	9.373238e-3
36	7961386	8035297	NM_031310	PLVAP	0.403766	1.944590e-5	3.369391e-1	9.359420e-3
37	7961386	8075306	ENST00000384724		-0.396377	2.841219e-5	4.922981e-1	1.330535e-2
38	7961386	8161563	ENST00000457995		0.393296	3.319151e-5	5.751094e-1	1.513446e-2
39	7961386	8026895	NM_138442	CCDC124	0.392999	3.369062e-5	5.837573e-1	1.496814e-2
40	7961386	7998664	NR_002327	SNORA10	0.392884	3.388557e-5	5.871353e-1	1.467838e-2
41	7961386	8041204	NR_002327	SNORA10	0.392884	3.388557e-5	5.871353e-1	1.432037e-2
42	7961386	8065903	ENST00000411308		-0.391972	3.546888e-5	6.145692e-1	1.463260e-2
43	7961386	7998852	NM_007108	TCEB2	0.391947	3.551314e-5	6.153361e-1	1.431014e-2
44	7961386	8003243	AK026130	LOC100288525	0.391655	3.603422e-5	6.243650e-1	1.419011e-2
45	7961386	7991602	NM_002570	PCSK6	0.390401	3.835938e-5	6.646530e-1	1.477007e-2
46	7961386	8043484	ENST00000416474		0.388378	4.240685e-5	7.347835e-1	1.597355e-2
47	7961386	7948643	NM_013401	RAB3IL1	0.386774	4.589454e-5	7.952146e-1	1.691946e-2
48	7961386	8043441	uc002stm		0.386610	4.626702e-5	8.016686e-1	1.670143e-2
49	7961386	8074498	NM_006440	TXNRD2	0.386207	4.719042e-5	8.176685e-1	1.668711e-2
50	7961386	8043449	BC030813	IGK@	0.385913	4.787636e-5	8.295537e-1	1.659107e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation