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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3571 7932554 NM_020824 ARHGAP21 link to infopage Rho GTPase activating protein 21

Fetching correlation data, please wait...
Getting list of correlations for id 3571.
Getting list of p-values for id 3571.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7932554 8111772 NM_001343 DAB2 link to infopage 0.700565 8.912138e-17 1.544206e-12 1.544206e-12
2 7932554 7928444 NM_014000 VCL link to infopage 0.676398 2.401557e-15 4.161177e-11 2.080589e-11
3 7932554 7936284 NM_020383 XPNPEP1 link to infopage 0.671891 4.289803e-15 7.432941e-11 2.477647e-11
4 7932554 7995580 GENSCAN00000014354 link to infopage 0.652634 4.581592e-14 7.938524e-10 1.984631e-10
5 7932554 7966135 NM_014325 CORO1C link to infopage 0.646390 9.524722e-14 1.650349e-9 3.300697e-10
6 7932554 7954997 NM_001025356 ANO6 link to infopage 0.638677 2.298372e-13 3.982388e-9 6.637314e-10
7 7932554 8102532 NM_001083 PDE5A link to infopage 0.633441 4.121112e-13 7.140651e-9 1.020093e-9
8 7932554 8129458 NM_033515 ARHGAP18 link to infopage 0.626267 9.011444e-13 1.561413e-8 1.951766e-9
9 7932554 8088745 NM_015123 FRMD4B link to infopage 0.625167 1.014221e-12 1.757341e-8 1.952601e-9
10 7932554 7982878 NM_007236 CHP link to infopage 0.617753 2.222795e-12 3.851437e-8 3.851437e-9
11 7932554 8115181 NM_001135643 DCTN4 link to infopage 0.616317 2.581345e-12 4.472696e-8 4.066087e-9
12 7932554 8054519 NM_004987 LIMS1 link to infopage 0.615168 2.908078e-12 5.038828e-8 4.199023e-9
13 7932554 8044333 NM_004987 LIMS1 link to infopage 0.615168 2.908078e-12 5.038828e-8 3.876021e-9
14 7932554 8119067 NM_173562 KCTD20 link to infopage 0.613021 3.628642e-12 6.287348e-8 4.490963e-9
15 7932554 8072577 NM_003405 YWHAH link to infopage 0.611627 4.185447e-12 7.252124e-8 4.834749e-9
16 7932554 8050427 NM_030797 FAM49A link to infopage 0.610133 4.874251e-12 8.445614e-8 5.278509e-9
17 7932554 8063716 NM_030773 TUBB1 link to infopage 0.605647 7.664027e-12 1.327946e-7 7.811447e-9
18 7932554 8123744 NM_000129 F13A1 link to infopage 0.605573 7.720989e-12 1.337816e-7 7.432310e-9
19 7932554 7968331 NM_003347 UBE2L3 link to infopage 0.605324 7.915432e-12 1.371507e-7 7.218458e-9
20 7932554 8107005 NM_001750 CAST link to infopage 0.605228 7.991744e-12 1.384730e-7 6.923648e-9
21 7932554 7932966 NM_033666 ITGB1 link to infopage 0.605036 8.146743e-12 1.411586e-7 6.721838e-9
22 7932554 8069644 NM_000484 APP link to infopage 0.602433 1.055243e-11 1.828419e-7 8.310998e-9
23 7932554 8021301 NM_004163 RAB27B link to infopage 0.600049 1.334790e-11 2.312790e-7 1.005561e-8
24 7932554 7907370 NM_015569 DNM3 link to infopage 0.594325 2.328438e-11 4.034485e-7 1.681035e-8
25 7932554 8115168 NM_018047 RBM22 link to infopage 0.592581 2.752667e-11 4.769547e-7 1.907819e-8
26 7932554 8050278 NM_005742 PDIA6 link to infopage 0.588087 4.217313e-11 7.307339e-7 2.810515e-8
27 7932554 8064351 NM_177559 CSNK2A1 link to infopage 0.586757 4.778635e-11 8.279941e-7 3.066645e-8
28 7932554 8085689 NM_014744 TBC1D5 link to infopage 0.583679 6.368595e-11 1.103486e-6 3.941023e-8
29 7932554 7995895 NM_014685 HERPUD1 link to infopage 0.582141 7.343177e-11 1.272352e-6 4.387422e-8
30 7932554 8095566 NM_173468 MOBKL1A link to infopage 0.581903 7.505690e-11 1.300511e-6 4.335036e-8
31 7932554 7962904 NM_001659 ARF3 link to infopage 0.581647 7.685277e-11 1.331628e-6 4.295574e-8
32 7932554 8086028 NM_000404 GLB1 link to infopage 0.580127 8.837913e-11 1.531345e-6 4.785454e-8
33 7932554 7948997 NM_015459 ATL3 link to infopage 0.580026 8.920253e-11 1.545612e-6 4.683674e-8
34 7932554 7947694 NM_001008938 CKAP5 link to infopage 0.579585 9.287502e-11 1.609245e-6 4.733075e-8
35 7932554 8026520 NM_005370 RAB8A link to infopage 0.577859 1.087220e-10 1.883826e-6 5.382360e-8
36 7932554 8088820 NM_012234 RYBP link to infopage 0.574181 1.516318e-10 2.627324e-6 7.298122e-8
37 7932554 7952557 NM_003139 SRPR link to infopage 0.573309 1.639658e-10 2.841035e-6 7.678474e-8
38 7932554 8110522 NM_001746 CANX link to infopage 0.571212 1.977343e-10 3.426142e-6 9.016164e-8
39 7932554 8166219 NM_032796 SYAP1 link to infopage 0.571125 1.992842e-10 3.452997e-6 8.853838e-8
40 7932554 7926670 ENST00000415292 link to infopage 0.570273 2.149439e-10 3.724333e-6 9.310832e-8
41 7932554 8177858 NM_178014 TUBB link to infopage 0.569935 2.214888e-10 3.837737e-6 9.360333e-8
42 7932554 8117995 NM_178014 TUBB link to infopage 0.569935 2.214888e-10 3.837737e-6 9.137468e-8
43 7932554 8179174 NM_178014 TUBB link to infopage 0.569935 2.214888e-10 3.837737e-6 8.924969e-8
44 7932554 8157858 NM_015635 GAPVD1 link to infopage 0.569507 2.300430e-10 3.985956e-6 9.058990e-8
45 7932554 8133788 NM_002835 PTPN12 link to infopage 0.569321 2.338497e-10 4.051914e-6 9.004253e-8
46 7932554 7966202 NM_031954 KCTD10 link to infopage 0.568865 2.434679e-10 4.218568e-6 9.170800e-8
47 7932554 8028172 NM_001749 CAPNS1 link to infopage 0.568561 2.500917e-10 4.333339e-6 9.219870e-8
48 7932554 8040618 NM_016131 RAB10 link to infopage 0.567611 2.719069e-10 4.711330e-6 9.815272e-8
49 7932554 8015715 NM_003766 BECN1 link to infopage 0.567383 2.774122e-10 4.806720e-6 9.809633e-8
50 7932554 8071426 NM_004782 SNAP29 link to infopage 0.567034 2.860397e-10 4.956210e-6 9.912421e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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