[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
643	8012326	NM_021628	ALOXE3		arachidonate lipoxygenase 3

Fetching correlation data, please wait...
Getting list of correlations for id 643.
Getting list of p-values for id 643.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8012326	8034469	NM_032301	FBXW9	0.817588	1.941441e-26	3.363935e-22	3.363935e-22
2	8012326	8101000	ENST00000437185		0.811010	1.006672e-25	1.744261e-21	8.721307e-22
3	8012326	8003939	NM_003963	TM4SF5	0.799756	1.455611e-24	2.522138e-20	8.407126e-21
4	8012326	8098848	NM_213613	SLC26A1	0.779344	1.229834e-22	2.130934e-18	5.327335e-19
5	8012326	8033487	NM_032447	FBN3	0.779191	1.269084e-22	2.198943e-18	4.397885e-19
6	8012326	8031499	AF086519	SSC5D	0.777347	1.850621e-22	3.206571e-18	5.344285e-19
7	8012326	8062948	NM_014276	RBPJL	0.777005	1.983992e-22	3.437664e-18	4.910948e-19
8	8012326	7937560	NM_002457	MUC2	0.774710	3.154200e-22	5.465283e-18	6.831603e-19
9	8012326	7955184	NM_006262	PRPH	0.772816	4.605193e-22	7.979417e-18	8.866019e-19
10	8012326	7939642	NM_052854	CREB3L1	0.771200	6.343559e-22	1.099149e-17	1.099149e-18
11	8012326	8023561	NM_005570	LMAN1	-0.770449	7.353247e-22	1.274097e-17	1.158270e-18
12	8012326	8086540	NM_020208	SLC6A20	0.770383	7.450115e-22	1.290881e-17	1.075734e-18
13	8012326	8023154	NM_001100817	TCEB3CL	0.770314	7.551503e-22	1.308449e-17	1.006499e-18
14	8012326	8110237	NM_133369	UNC5A	0.769366	9.093466e-22	1.575625e-17	1.125446e-18
15	8012326	7998668	NM_144603	NOXO1	0.769153	9.478519e-22	1.642343e-17	1.094895e-18
16	8012326	8019576	NM_033184	KRTAP2-4	0.768065	1.171484e-21	2.029831e-17	1.268644e-18
17	8012326	8015210	NM_033184	KRTAP2-4	0.768065	1.171484e-21	2.029831e-17	1.194018e-18
18	8012326	8053728	NM_000798	DRD5	0.767330	1.350834e-21	2.340590e-17	1.300328e-18
19	8012326	8137330	ENST00000356058		0.765666	1.861651e-21	3.225683e-17	1.697728e-18
20	8012326	8019574	NM_033184	KRTAP2-4	0.763773	2.672279e-21	4.630259e-17	2.315129e-18
21	8012326	8015214	NM_033184	KRTAP2-4	0.763773	2.672279e-21	4.630259e-17	2.204885e-18
22	8012326	8099406	NM_001189	NKX3-2	0.763339	2.901857e-21	5.028048e-17	2.285476e-18
23	8012326	7963880	NM_001144996	ITGA7	0.759833	5.610774e-21	9.721788e-17	4.226864e-18
24	8012326	8049799	NM_001001891	ANO7	0.759693	5.759035e-21	9.978679e-17	4.157783e-18
25	8012326	8028613	NM_172140	IL29	0.759292	6.205079e-21	1.075154e-16	4.300616e-18
26	8012326	7998015	NM_032451	SPIRE2	0.759078	6.456295e-21	1.118682e-16	4.302624e-18
27	8012326	8013112	NM_016084	RASD1	0.758451	7.252776e-21	1.256688e-16	4.654402e-18
28	8012326	7981917	NM_018958	C15orf2	0.757954	7.950944e-21	1.377660e-16	4.920214e-18
29	8012326	8037732	NM_001029861	NANOS2	0.757688	8.351758e-21	1.447109e-16	4.990032e-18
30	8012326	8104307	AY249325	C5orf38	0.757195	9.146500e-21	1.584814e-16	5.282713e-18
31	8012326	8064059	NM_020882	COL20A1	0.757165	9.196908e-21	1.593548e-16	5.140478e-18
32	8012326	8114550	NM_004883	NRG2	0.756211	1.095676e-20	1.898477e-16	5.932741e-18
33	8012326	7975562	NM_173462	PAPLN	0.755465	1.255921e-20	2.176134e-16	6.594346e-18
34	8012326	7949015	NM_001144936	C11orf95	0.755194	1.319637e-20	2.286535e-16	6.725103e-18
35	8012326	8121209	NM_005604	POU3F2	0.754612	1.466996e-20	2.541863e-16	7.262467e-18
36	8012326	8029530	NM_000041	APOE	0.754252	1.566074e-20	2.713537e-16	7.537601e-18
37	8012326	8023152	NM_001100817	TCEB3CL	0.753970	1.648286e-20	2.855986e-16	7.718880e-18
38	8012326	8064242	NR_027686	NCRNA00176	0.753309	1.857933e-20	3.219241e-16	8.471687e-18
39	8012326	8075211	NM_001007279	RASL10A	0.753057	1.944422e-20	3.369100e-16	8.638719e-18
40	8012326	7992147	NM_021098	CACNA1H	0.752536	2.135860e-20	3.700804e-16	9.252010e-18
41	8012326	8156783	NM_001855	COL15A1	0.751394	2.621772e-20	4.542745e-16	1.107987e-17
42	8012326	8008228	NM_138281	DLX4	0.751219	2.705220e-20	4.687335e-16	1.116032e-17
43	8012326	8049942	NM_080741	NEU4	0.750481	3.086403e-20	5.347811e-16	1.243677e-17
44	8012326	8015223	NM_031854	KRTAP4-12	0.749046	3.982661e-20	6.900757e-16	1.568354e-17
45	8012326	8019565	NM_031854	KRTAP4-12	0.749046	3.982661e-20	6.900757e-16	1.533502e-17
46	8012326	7898556	NM_001040125	PQLC2	0.748957	4.045288e-20	7.009270e-16	1.523754e-17
47	8012326	8125805	NM_000841	GRM4	0.748925	4.068452e-20	7.049407e-16	1.499874e-17
48	8012326	8073449	NM_014460	CSDC2	0.748898	4.088324e-20	7.083839e-16	1.475800e-17
49	8012326	8163936	NM_014368	LHX6	0.748886	4.096685e-20	7.098326e-16	1.448638e-17
50	8012326	8123802	NM_201280	MUTED	-0.748784	4.171485e-20	7.227932e-16	1.445586e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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