[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2433	7985089	NM_002902	RCN2		reticulocalbin 2, EF-hand calcium binding domain

Fetching correlation data, please wait...
Getting list of correlations for id 2433.
Getting list of p-values for id 2433.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7985089	8070083	NM_006134	TMEM50B	0.659988	1.892650e-14	3.279395e-10	3.279395e-10
2	7985089	7901867	NM_003368	USP1	0.648502	7.449824e-14	1.290831e-9	6.454155e-10
3	7985089	8138531	NM_001402	EEF1A1	0.644899	1.131489e-13	1.960531e-9	6.535102e-10
4	7985089	8121031	NM_006416	SLC35A1	0.644571	1.174962e-13	2.035857e-9	5.089643e-10
5	7985089	8090256	NM_003794	SNX4	0.640601	1.849197e-13	3.204104e-9	6.408209e-10
6	7985089	8158952	NM_001402	EEF1A1	0.638773	2.273547e-13	3.939374e-9	6.565624e-10
7	7985089	8058695	NM_000465	BARD1	0.628691	6.934201e-13	1.201489e-8	1.716413e-9
8	7985089	7923119	NM_194314	ZBTB41	0.628500	7.079206e-13	1.226614e-8	1.533267e-9
9	7985089	8171747	NM_001412	EIF1AX	0.628238	7.283164e-13	1.261954e-8	1.402171e-9
10	7985089	7971565	NM_005767	LPAR6	0.625128	1.018464e-12	1.764693e-8	1.764693e-9
11	7985089	8069532	NM_006948	HSPA13	0.621603	1.482761e-12	2.569180e-8	2.335619e-9
12	7985089	8078270	NM_002948	RPL15	0.619167	1.916922e-12	3.321452e-8	2.767876e-9
13	7985089	8169969	NM_032458	PHF6	0.618187	2.124076e-12	3.680387e-8	2.831067e-9
14	7985089	7917088	NM_005482	PIGK	0.616397	2.560140e-12	4.435954e-8	3.168538e-9
15	7985089	7903908	NM_006090	CEPT1	0.615292	2.870925e-12	4.974452e-8	3.316302e-9
16	7985089	7902634	NM_025065	RPF1	0.614353	3.163565e-12	5.481510e-8	3.425944e-9
17	7985089	8126394	NM_018141	MRPS10	0.609857	5.013043e-12	8.686100e-8	5.109471e-9
18	7985089	8141024	NM_005868	BET1	0.608650	5.665243e-12	9.816166e-8	5.453426e-9
19	7985089	8151281	NM_014294	TRAM1	0.606458	7.065651e-12	1.224265e-7	6.443502e-9
20	7985089	8099887	NM_001024921	RPL9	0.603705	9.301463e-12	1.611664e-7	8.058322e-9
21	7985089	8030908	NM_144684	ZNF480	0.603190	9.789814e-12	1.696281e-7	8.077529e-9
22	7985089	7973840	NM_001030055	ARHGAP5	0.601634	1.141947e-11	1.978652e-7	8.993873e-9
23	7985089	8046318	NM_025000	DCAF17	0.601201	1.191829e-11	2.065082e-7	8.978616e-9
24	7985089	8151935	NM_000989	RPL30	0.600816	1.237846e-11	2.144816e-7	8.936735e-9
25	7985089	7954388	NM_016072	GOLT1B	0.599882	1.356824e-11	2.350969e-7	9.403878e-9
26	7985089	7985053	NM_147188	FBXO22	0.599230	1.446452e-11	2.506267e-7	9.639488e-9
27	7985089	8160405	NM_018847	KLHL9	0.599166	1.455560e-11	2.522049e-7	9.340921e-9
28	7985089	7999827	NM_001019	RPS15A	0.598851	1.501021e-11	2.600819e-7	9.288639e-9
29	7985089	7990898	NM_000661	RPL9	0.598081	1.618256e-11	2.803953e-7	9.668803e-9
30	7985089	8047815	NM_001136194	FASTKD2	0.598010	1.629548e-11	2.823518e-7	9.411726e-9
31	7985089	8171834	NM_000661	RPL9	0.597908	1.645766e-11	2.851619e-7	9.198770e-9
32	7985089	8023735	NM_019022	TMX3	0.597870	1.651818e-11	2.862104e-7	8.944076e-9
33	7985089	8151549	NM_005536	IMPA1	0.597558	1.702850e-11	2.950528e-7	8.940994e-9
34	7985089	7990949	NM_000661	RPL9	0.596149	1.952494e-11	3.383086e-7	9.950253e-9
35	7985089	7943605	NM_000019	ACAT1	0.595752	2.029003e-11	3.515653e-7	1.004472e-8
36	7985089	7902345	NM_138467	TYW3	0.595454	2.088261e-11	3.618329e-7	1.005091e-8
37	7985089	7917604	NM_201269	ZNF644	0.595027	2.176155e-11	3.770625e-7	1.019088e-8
38	7985089	7950544	NM_004705	PRKRIR	0.594607	2.265960e-11	3.926228e-7	1.033218e-8
39	7985089	7901895	NM_032852	ATG4C	0.593990	2.404550e-11	4.166364e-7	1.068298e-8
40	7985089	8113023	NM_153354	TMEM161B	0.593525	2.514505e-11	4.356883e-7	1.089221e-8
41	7985089	8147262	NM_016023	OTUD6B	0.592586	2.751127e-11	4.766878e-7	1.162653e-8
42	7985089	7957540	NM_014050	MRPL42	0.592575	2.754031e-11	4.771909e-7	1.136169e-8
43	7985089	8135688	NM_016200	NAA38	0.592027	2.902248e-11	5.028725e-7	1.169471e-8
44	7985089	8083333	NM_032025	EIF2A	0.591215	3.135734e-11	5.433286e-7	1.234838e-8
45	7985089	8027674	NM_018443	ZNF302	0.589911	3.549371e-11	6.149996e-7	1.366666e-8
46	7985089	7971541	NM_003850	SUCLA2	0.589570	3.666123e-11	6.352292e-7	1.380933e-8
47	7985089	7947221	NM_018362	LIN7C	0.588220	4.164569e-11	7.215949e-7	1.535308e-8
48	7985089	7946742	NM_024514	CYP2R1	0.588039	4.236540e-11	7.340652e-7	1.529303e-8
49	7985089	7979565	NM_080666	WDR89	0.586590	4.854333e-11	8.411102e-7	1.716551e-8
50	7985089	8142307	NM_015723	PNPLA8	0.586261	5.006280e-11	8.674381e-7	1.734876e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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