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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
4936 8074730 NM_004327 BCR link to infopage breakpoint cluster region
6159 8071516 NM_004327 BCR link to infopage breakpoint cluster region
12774 8071691 NM_004327 BCR link to infopage breakpoint cluster region

Fetching correlation data, please wait...
Getting list of correlations for id 4936.
Getting list of p-values for id 4936.
1 of 3 done.
Getting list of correlations for id 6159.
Getting list of p-values for id 6159.
2 of 3 done.
Getting list of correlations for id 12774.
Getting list of p-values for id 12774.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.253 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8071516 8074730 NM_004327 BCR link to infopage 0.816921 2.301273e-26 1.196225e-21 1.196225e-21
2 8074730 8071516 NM_004327 BCR link to infopage 0.816921 2.301273e-26 1.196225e-21 5.981124e-22
3 8071516 8019885 NM_015295 SMCHD1 link to infopage -0.675862 2.574293e-15 1.338143e-10 4.460478e-11
4 8071516 7958216 NM_015275 KIAA1033 link to infopage -0.667413 7.558513e-15 3.928991e-10 9.822477e-11
5 8071516 7903541 NM_007269 STXBP3 link to infopage -0.661804 1.515622e-14 7.878355e-10 1.575671e-10
6 8071691 8134777 NM_024070 PVRIG link to infopage 0.657667 2.508370e-14 1.303876e-9 2.173126e-10
7 8071516 8170428 NM_000252 MTM1 link to infopage -0.654528 3.657151e-14 1.901023e-9 2.715748e-10
8 8071516 8152133 NM_015713 RRM2B link to infopage -0.653064 4.353778e-14 2.263137e-9 2.828922e-10
9 8071516 8081256 NM_018309 TBC1D23 link to infopage -0.653003 4.385521e-14 2.279638e-9 2.532931e-10
10 8071516 7903703 NM_006496 GNAI3 link to infopage -0.652972 4.401462e-14 2.287924e-9 2.287924e-10
11 8071691 8077042 NM_002972 SBF1 link to infopage 0.651440 5.276970e-14 2.743022e-9 2.493656e-10
12 8071516 7954810 NM_198578 LRRK2 link to infopage -0.647773 8.111344e-14 4.216358e-9 3.513631e-10
13 8071516 8150757 NM_014781 RB1CC1 link to infopage -0.646496 9.408613e-14 4.890691e-9 3.762070e-10
14 8071516 8155422 NM_201453 CBWD3 link to infopage -0.646376 9.539817e-14 4.958892e-9 3.542066e-10
15 8071516 8047401 AK125394 link to infopage -0.642042 1.569797e-13 8.159964e-9 5.439976e-10
16 8071516 7957277 NM_015336 ZDHHC17 link to infopage -0.640953 1.776707e-13 9.235502e-9 5.772189e-10
17 8071516 8023672 NM_004869 VPS4B link to infopage -0.639726 2.041779e-13 1.061337e-8 6.243160e-10
18 8071516 8161587 NM_201453 CBWD3 link to infopage -0.637356 2.665802e-13 1.385710e-8 7.698390e-10
19 8071516 8099449 NM_033535 FBXL5 link to infopage -0.637316 2.677902e-13 1.392000e-8 7.326318e-10
20 8071516 8052680 NM_004161 RAB1A link to infopage -0.636950 2.790064e-13 1.450303e-8 7.251516e-10
21 8071516 7974621 NM_002892 ARID4A link to infopage -0.636168 3.044650e-13 1.582640e-8 7.536380e-10
22 8071516 7933877 NM_004241 JMJD1C link to infopage -0.634650 3.605095e-13 1.873964e-8 8.518020e-10
23 8071516 8090277 NM_022776 OSBPL11 link to infopage -0.633905 3.915354e-13 2.035240e-8 8.848871e-10
24 8071516 8152863 ENST00000363205 link to infopage -0.633187 4.238597e-13 2.203265e-8 9.180271e-10
25 8071516 8088700 NM_007114 TMF1 link to infopage -0.633064 4.296183e-13 2.233199e-8 8.932795e-10
26 8071516 8155636 NM_201453 CBWD3 link to infopage -0.632617 4.513171e-13 2.345991e-8 9.023044e-10
27 8071516 7925561 NM_198076 FAM36A link to infopage -0.632273 4.687652e-13 2.436689e-8 9.024773e-10
28 8071516 7966343 ENST00000365465 link to infopage -0.630631 5.612901e-13 2.917642e-8 1.042015e-9
29 8071516 7897068 NM_003036 SKI link to infopage 0.630563 5.654786e-13 2.939414e-8 1.013591e-9
30 8071516 8113358 NM_005668 ST8SIA4 link to infopage -0.630548 5.663585e-13 2.943988e-8 9.813293e-10
31 8071516 8052307 NM_001122964 SMEK2 link to infopage -0.630488 5.700944e-13 2.963408e-8 9.559380e-10
32 8071516 7919800 NM_004079 CTSS link to infopage -0.630463 5.716429e-13 2.971457e-8 9.285803e-10
33 8071516 7925201 NM_016374 ARID4B link to infopage -0.630429 5.737737e-13 2.982533e-8 9.037979e-10
34 8071691 8098880 NM_001012614 CTBP1 link to infopage 0.628635 6.976276e-13 3.626338e-8 1.066570e-9
35 8071516 8055978 NM_152789 FAM133B link to infopage -0.628614 6.992324e-13 3.634680e-8 1.038480e-9
36 8071516 8113305 NM_001270 CHD1 link to infopage -0.628299 7.235190e-13 3.760924e-8 1.044701e-9
37 8071516 8135392 NM_012257 HBP1 link to infopage -0.626136 9.139289e-13 4.750694e-8 1.283971e-9
38 8071516 8044686 NM_005721 ACTR3 link to infopage -0.625759 9.517342e-13 4.947210e-8 1.301897e-9
39 8071516 8106602 NM_014733 ZFYVE16 link to infopage -0.625361 9.933175e-13 5.163364e-8 1.323939e-9
40 8071516 8105463 NM_022913 GPBP1 link to infopage -0.625118 1.019590e-12 5.299929e-8 1.324982e-9
41 8071516 7970907 NM_014887 N4BP2L2 link to infopage -0.624880 1.045882e-12 5.436600e-8 1.326000e-9
42 8071516 7933947 NM_022079 HERC4 link to infopage -0.624150 1.130932e-12 5.878699e-8 1.399690e-9
43 8071516 8092933 NM_012287 ACAP2 link to infopage -0.623349 1.231751e-12 6.402764e-8 1.489015e-9
44 8071516 8091141 NM_019001 XRN1 link to infopage -0.623172 1.255202e-12 6.524664e-8 1.482878e-9
45 8071516 8044613 NM_001145355 CBWD1 link to infopage -0.622990 1.279818e-12 6.652620e-8 1.478360e-9
46 8071516 8058127 NR_027856 CLK1 link to infopage -0.622716 1.317628e-12 6.849160e-8 1.488948e-9
47 8071516 8171708 NM_198279 CXorf23 link to infopage -0.622573 1.337786e-12 6.953943e-8 1.479562e-9
48 8071516 7917240 NM_004388 CTBS link to infopage -0.622467 1.352959e-12 7.032816e-8 1.465170e-9
49 8071516 8059393 NM_003590 CUL3 link to infopage -0.621119 1.560618e-12 8.112251e-8 1.655561e-9
50 8071516 7956670 NM_006313 USP15 link to infopage -0.620240 1.712230e-12 8.900341e-8 1.780068e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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