[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6094	7898616	NM_022819	PLA2G2F		phospholipase A2, group IIF

Fetching correlation data, please wait...
Getting list of correlations for id 6094.
Getting list of p-values for id 6094.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7898616	8075200	NM_012265	RHBDD3	0.822811	5.010572e-27	8.681819e-23	8.681819e-23
2	7898616	8114550	NM_004883	NRG2	0.816736	2.412026e-26	4.179318e-22	2.089659e-22
3	7898616	8028407	NM_000540	RYR1	0.816283	2.705237e-26	4.687363e-22	1.562454e-22
4	7898616	7913450	NM_005529	HSPG2	0.808705	1.764653e-25	3.057614e-21	7.644034e-22
5	7898616	7927367	NM_001040084	ANXA8	0.807844	2.172540e-25	3.764359e-21	7.528719e-22
6	7898616	7997801	NM_013278	IL17C	0.805843	3.506594e-25	6.075876e-21	1.012646e-21
7	7898616	7936144	NM_000494	COL17A1	0.803705	5.814704e-25	1.007514e-20	1.439305e-21
8	7898616	8042537	NM_001692	ATP6V1B1	0.803441	6.186329e-25	1.071905e-20	1.339881e-21
9	7898616	8096556	NM_015143	METAP1	-0.802077	8.508351e-25	1.474242e-20	1.638047e-21
10	7898616	8115524	NM_014666	CLINT1	-0.799684	1.479763e-24	2.563986e-20	2.563986e-21
11	7898616	8007537	NM_145273	CD300LG	0.799437	1.566221e-24	2.713791e-20	2.467082e-21
12	7898616	7897416	NM_001080397	SLC45A1	0.799020	1.722993e-24	2.985431e-20	2.487859e-21
13	7898616	8155942	NM_001013735	FOXB2	0.798667	1.867922e-24	3.236548e-20	2.489652e-21
14	7898616	7906307	NM_018240	KIRREL	0.797832	2.259414e-24	3.914888e-20	2.796348e-21
15	7898616	8005328	NM_016239	MYO15A	0.797299	2.549711e-24	4.417884e-20	2.945256e-21
16	7898616	7987701	NM_016642	SPTBN5	0.796071	3.365045e-24	5.830614e-20	3.644134e-21
17	7898616	8116033	NM_000505	F12	0.794950	4.327500e-24	7.498259e-20	4.410741e-21
18	7898616	7936762	NM_001001976	ATE1	-0.794633	4.644808e-24	8.048059e-20	4.471144e-21
19	7898616	7914667	NM_052896	CSMD2	0.794299	5.004637e-24	8.671535e-20	4.563966e-21
20	7898616	7983663	NM_005154	USP8	-0.793781	5.615511e-24	9.729995e-20	4.864998e-21
21	7898616	7944882	NM_022370	ROBO3	0.793359	6.167759e-24	1.068688e-19	5.088988e-21
22	7898616	7927307	NM_001630	ANXA8L2	0.793184	6.410814e-24	1.110802e-19	5.049099e-21
23	7898616	8115691	NM_003062	SLIT3	0.793046	6.610188e-24	1.145347e-19	4.979771e-21
24	7898616	8124868	NM_001105564	CCHCR1	0.792510	7.442365e-24	1.289539e-19	5.373077e-21
25	7898616	8140403	NM_080744	SRCRB4D	0.792006	8.315123e-24	1.440761e-19	5.763046e-21
26	7898616	8086810	NM_003074	SMARCC1	-0.790873	1.066298e-23	1.847574e-19	7.106055e-21
27	7898616	8032312	NM_138813	ATP8B3	0.790159	1.246095e-23	2.159109e-19	7.996699e-21
28	7898616	8153322	NM_015193	ARC	0.789543	1.424923e-23	2.468964e-19	8.817730e-21
29	7898616	7947991	NM_015231	NUP160	-0.788745	1.693861e-23	2.934953e-19	1.012053e-20
30	7898616	8170716	NM_005393	PLXNB3	0.787335	2.295055e-23	3.976642e-19	1.325547e-20
31	7898616	8036072	NM_207392	KRTDAP	0.786967	2.483159e-23	4.302570e-19	1.387926e-20
32	7898616	8132832	AK057400	LOC100129427	0.786709	2.624113e-23	4.546800e-19	1.420875e-20
33	7898616	7945688	NR_003512	INS-IGF2	0.786656	2.654252e-23	4.599023e-19	1.393643e-20
34	7898616	8172876	NM_006306	SMC1A	-0.786607	2.681949e-23	4.647014e-19	1.366769e-20
35	7898616	7937560	NM_002457	MUC2	0.786241	2.899996e-23	5.024824e-19	1.435664e-20
36	7898616	8175732	NM_175742	MAGEA2	0.786164	2.947869e-23	5.107773e-19	1.418826e-20
37	7898616	8028806	NM_020971	SPTBN4	0.785024	3.756561e-23	6.508993e-19	1.759187e-20
38	7898616	8006562	NM_033315	RASL10B	0.783946	4.718202e-23	8.175228e-19	2.151376e-20
39	7898616	7896865	NM_153254	TTLL10	0.783843	4.821803e-23	8.354738e-19	2.142240e-20
40	7898616	8103859	NM_001012732	DCTD	-0.783825	4.839331e-23	8.385109e-19	2.096277e-20
41	7898616	8090639	NM_014602	PIK3R4	-0.783601	5.072818e-23	8.789671e-19	2.143822e-20
42	7898616	8110821	NM_001044	SLC6A3	0.783398	5.294834e-23	9.174359e-19	2.184371e-20
43	7898616	7977418	NM_001134875	C14orf80	0.783380	5.314039e-23	9.207636e-19	2.141311e-20
44	7898616	8086985	NM_000094	COL7A1	0.783258	5.452209e-23	9.447042e-19	2.147055e-20
45	7898616	7949227	NM_017525	CDC42BPG	0.782762	6.050658e-23	1.048398e-18	2.329772e-20
46	7898616	7959234	NM_000545	HNF1A	0.782561	6.310655e-23	1.093447e-18	2.377059e-20
47	7898616	8041582	NM_138370	PKDCC	0.782395	6.533309e-23	1.132026e-18	2.408567e-20
48	7898616	8001014	NM_173502	PRSS36	0.781042	8.659275e-23	1.500393e-18	3.125818e-20
49	7898616	8112121	NM_173514	SLC38A9	-0.780948	8.830310e-23	1.530028e-18	3.122506e-20
50	7898616	8131056	NM_017781	CYP2W1	0.780451	9.787158e-23	1.695821e-18	3.391642e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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