[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2335	7921652	NM_003037	SLAMF1		signaling lymphocytic activation molecule family member 1

Fetching correlation data, please wait...
Getting list of correlations for id 2335.
Getting list of p-values for id 2335.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7921652	8040340	NM_145693	LPIN1	0.687858	5.240710e-16	9.080579e-12	9.080579e-12
2	7921652	8111286	NM_013235	RNASEN	0.679190	1.667909e-15	2.889986e-11	1.444993e-11
3	7921652	7969533	NM_001040153	SLAIN1	0.676217	2.458740e-15	4.260260e-11	1.420087e-11
4	7921652	8089040	NM_001042533	MINA	0.676109	2.493177e-15	4.319928e-11	1.079982e-11
5	7921652	8119858	NM_006502	POLH	0.673674	3.414280e-15	5.915924e-11	1.183185e-11
6	7921652	7939265	NM_024662	NAT10	0.672272	4.085849e-15	7.079551e-11	1.179925e-11
7	7921652	8162313	NM_013417	IARS	0.671505	4.506238e-15	7.807959e-11	1.115423e-11
8	7921652	8052803	NM_014911	AAK1	0.671176	4.698568e-15	8.141209e-11	1.017651e-11
9	7921652	8087271	NM_017730	QRICH1	0.668826	6.328067e-15	1.096464e-10	1.218294e-11
10	7921652	7963750	NM_012117	CBX5	0.668709	6.421487e-15	1.112651e-10	1.112651e-11
11	7921652	7953200	NM_001759	CCND2	0.665894	9.139232e-15	1.583555e-10	1.439595e-11
12	7921652	8145922	NM_015214	DDHD2	0.665683	9.382391e-15	1.625687e-10	1.354739e-11
13	7921652	8099051	NM_003703	NOP14	0.665624	9.451652e-15	1.637688e-10	1.259760e-11
14	7921652	8084717	NM_173216	ST6GAL1	0.664908	1.033203e-14	1.790231e-10	1.278737e-11
15	7921652	8046306	NM_015530	GORASP2	0.663642	1.208588e-14	2.094120e-10	1.396080e-11
16	7921652	8014891	NM_012481	IKZF3	0.659610	1.981800e-14	3.433866e-10	2.146166e-11
17	7921652	8174692	NM_145799	SEPT6	0.658543	2.256268e-14	3.909435e-10	2.299668e-11
18	7921652	8126588	NM_020750	XPO5	0.656640	2.839357e-14	4.919755e-10	2.733197e-11
19	7921652	7905185	NM_015203	RPRD2	0.656638	2.839844e-14	4.920598e-10	2.589788e-11
20	7921652	8110090	NM_022754	SFXN1	0.653558	4.105795e-14	7.114112e-10	3.557056e-11
21	7921652	8066668	NM_020967	NCOA5	0.653353	4.207038e-14	7.289534e-10	3.471207e-11
22	7921652	8025697	NM_012218	ILF3	0.651943	4.972505e-14	8.615860e-10	3.916300e-11
23	7921652	8020630	NM_153211	TTC39C	0.651428	5.284375e-14	9.156236e-10	3.980972e-11
24	7921652	7972487	NM_015296	DOCK9	0.651228	5.410833e-14	9.375350e-10	3.906396e-11
25	7921652	7923917	NM_005449	FAIM3	0.651143	5.465272e-14	9.469676e-10	3.787870e-11
26	7921652	8066303	NM_032221	CHD6	0.650731	5.736613e-14	9.939829e-10	3.823011e-11
27	7921652	7930008	NM_004741	NOLC1	0.650250	6.070432e-14	1.051824e-9	3.895643e-11
28	7921652	8136401	NM_015135	NUP205	0.648628	7.341318e-14	1.272030e-9	4.542965e-11
29	7921652	8158446	NM_015354	NUP188	0.648222	7.697355e-14	1.333721e-9	4.599037e-11
30	7921652	7909545	NM_145759	TRAF5	0.645554	1.049121e-13	1.817812e-9	6.059373e-11
31	7921652	7944179	NM_000733	CD3E	0.644725	1.154419e-13	2.000262e-9	6.452458e-11
32	7921652	7944223	NM_005933	MLL	0.644257	1.218163e-13	2.110711e-9	6.595973e-11
33	7921652	8016414	NM_003726	SKAP1	0.643599	1.313756e-13	2.276346e-9	6.898017e-11
34	7921652	8132819	NM_006060	IKZF1	0.643498	1.329054e-13	2.302851e-9	6.773091e-11
35	7921652	7902874	NM_032270	LRRC8C	0.643235	1.369800e-13	2.373452e-9	6.781292e-11
36	7921652	7908732	NM_018085	IPO9	0.641893	1.596566e-13	2.766371e-9	7.684363e-11
37	7921652	7972003	NM_007249	KLF12	0.641779	1.617484e-13	2.802614e-9	7.574632e-11
38	7921652	8134470	NM_003496	TRRAP	0.641337	1.700917e-13	2.947179e-9	7.755735e-11
39	7921652	7951614	NM_002716	PPP2R1B	0.640350	1.902673e-13	3.296762e-9	8.453236e-11
40	7921652	7982957	NM_001080541	MGA	0.639701	2.047635e-13	3.547937e-9	8.869844e-11
41	7921652	8130505	NM_003379	EZR	0.639538	2.085652e-13	3.613809e-9	8.814167e-11
42	7921652	8005141	NM_017775	TTC19	0.639428	2.111586e-13	3.658745e-9	8.711297e-11
43	7921652	7987405	NM_005739	RASGRP1	0.638590	2.320923e-13	4.021463e-9	9.352240e-11
44	7921652	8135458	NM_024814	CBLL1	0.637623	2.587412e-13	4.483208e-9	1.018911e-10
45	7921652	7971246	NM_015058	KIAA0564	0.637571	2.602381e-13	4.509146e-9	1.002032e-10
46	7921652	7912385	NM_001001998	EXOSC10	0.637338	2.671423e-13	4.628774e-9	1.006255e-10
47	7921652	7931930	NM_006257	PRKCQ	0.636969	2.784125e-13	4.824054e-9	1.026394e-10
48	7921652	7948192	NM_003146	SSRP1	0.636488	2.937862e-13	5.090434e-9	1.060507e-10
49	7921652	8001666	NM_001896	CSNK2A2	0.635968	3.113222e-13	5.394280e-9	1.100874e-10
50	7921652	7948696	NM_004739	MTA2	0.633754	3.981229e-13	6.898276e-9	1.379655e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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