[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4517	8077817	NM_014229	SLC6A11		solute carrier family 6 (neurotransmitter transporter, GABA), member 11

Fetching correlation data, please wait...
Getting list of correlations for id 4517.
Getting list of p-values for id 4517.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8077817	7913450	NM_005529	HSPG2	0.738656	2.399469e-19	4.157560e-15	4.157560e-15
2	8077817	8124868	NM_001105564	CCHCR1	0.736049	3.715675e-19	6.438149e-15	3.219075e-15
3	8077817	8067409	NM_005560	LAMA5	0.729619	1.069186e-18	1.852579e-14	6.175262e-15
4	8077817	7936144	NM_000494	COL17A1	0.729072	1.167994e-18	2.023782e-14	5.059456e-15
5	8077817	8008723	NM_000502	EPX	0.722956	3.097735e-18	5.367446e-14	1.073489e-14
6	8077817	7898616	NM_022819	PLA2G2F	0.719924	4.975910e-18	8.621760e-14	1.436960e-14
7	8077817	7904927	NM_005267	GJA8	0.718560	6.146016e-18	1.064920e-13	1.521314e-14
8	8077817	8036989	ENST00000412510		0.718417	6.282756e-18	1.088613e-13	1.360766e-14
9	8077817	8092888	NM_138399	TMEM44	0.717966	6.735272e-18	1.167021e-13	1.296689e-14
10	8077817	7945688	NR_003512	INS-IGF2	0.717537	7.194246e-18	1.246547e-13	1.246547e-14
11	8077817	8125568	NM_080680	COL11A2	0.715109	1.042776e-17	1.806818e-13	1.642562e-14
12	8077817	8178448	NM_001105564	CCHCR1	0.714059	1.222975e-17	2.119048e-13	1.765874e-14
13	8077817	8041582	NM_138370	PKDCC	0.713801	1.271654e-17	2.203395e-13	1.694919e-14
14	8077817	7987701	NM_016642	SPTBN5	0.712467	1.554935e-17	2.694236e-13	1.924454e-14
15	8077817	7920220	NM_052891	PGLYRP3	0.711237	1.870000e-17	3.240149e-13	2.160099e-14
16	8077817	8156783	NM_001855	COL15A1	0.711199	1.880810e-17	3.258879e-13	2.036799e-14
17	8077817	8049509	NM_015893	PRLH	0.709084	2.576905e-17	4.465003e-13	2.626472e-14
18	8077817	7925972	NM_005185	CALML3	0.707916	3.062719e-17	5.306772e-13	2.948207e-14
19	8077817	7927307	NM_001630	ANXA8L2	0.707627	3.196117e-17	5.537912e-13	2.914690e-14
20	8077817	7986960	NM_015307	FAM189A1	0.706737	3.643014e-17	6.312251e-13	3.156126e-14
21	8077817	8005879	NR_027384	SLC13A2	0.706437	3.807284e-17	6.596882e-13	3.141372e-14
22	8077817	8026735	NM_133644	GTPBP3	0.706090	4.005454e-17	6.940251e-13	3.154659e-14
23	8077817	7996027	NM_002996	CX3CL1	0.705876	4.133159e-17	7.161525e-13	3.113706e-14
24	8077817	8072039	NM_032608	MYO18B	0.705799	4.180103e-17	7.242865e-13	3.017860e-14
25	8077817	8064111	NM_032957	RTEL1	0.705249	4.529401e-17	7.848094e-13	3.139237e-14
26	8077817	8049166	NM_005199	CHRNG	0.705060	4.655916e-17	8.067305e-13	3.102810e-14
27	8077817	8067506	BC137326	C20orf151	0.704486	5.062105e-17	8.771109e-13	3.248559e-14
28	8077817	8110821	NM_001044	SLC6A3	0.703872	5.534025e-17	9.588805e-13	3.424573e-14
29	8077817	8033487	NM_032447	FBN3	0.702742	6.517517e-17	1.129290e-12	3.894104e-14
30	8077817	8075200	NM_012265	RHBDD3	0.702558	6.692687e-17	1.159642e-12	3.865473e-14
31	8077817	8028407	NM_000540	RYR1	0.702015	7.237456e-17	1.254034e-12	4.045271e-14
32	8077817	8114550	NM_004883	NRG2	0.701050	8.313234e-17	1.440434e-12	4.501357e-14
33	8077817	8123446	NM_022138	SMOC2	0.700361	9.175363e-17	1.589815e-12	4.817621e-14
34	8077817	7955184	NM_006262	PRPH	0.699154	1.089944e-16	1.888546e-12	5.554547e-14
35	8077817	8044933	NM_005270	GLI2	0.698720	1.159287e-16	2.008696e-12	5.739131e-14
36	8077817	8075118	NM_001887	CRYBB1	0.698630	1.174127e-16	2.034410e-12	5.651140e-14
37	8077817	7937728	NM_001145829	TNNI2	0.698025	1.279258e-16	2.216571e-12	5.990733e-14
38	8077817	7937560	NM_002457	MUC2	0.697934	1.295973e-16	2.245533e-12	5.909297e-14
39	8077817	7991313	NM_002666	PLIN1	0.697864	1.308872e-16	2.267883e-12	5.815085e-14
40	8077817	8064059	NM_020882	COL20A1	0.697565	1.365389e-16	2.365810e-12	5.914525e-14
41	8077817	8067610	NM_000744	CHRNA4	0.697563	1.365648e-16	2.366257e-12	5.771360e-14
42	8077817	7927367	NM_001040084	ANXA8	0.697543	1.369643e-16	2.373180e-12	5.650429e-14
43	8077817	8143247	NM_020910	KIAA1549	0.697344	1.408674e-16	2.440809e-12	5.676301e-14
44	8077817	7897132	NM_022114	PRDM16	0.696553	1.574669e-16	2.728430e-12	6.200977e-14
45	8077817	8076007	NM_025045	BAIAP2L2	0.696546	1.576227e-16	2.731129e-12	6.069176e-14
46	8077817	7977216	NM_015656	KIF26A	0.696233	1.647284e-16	2.854250e-12	6.204891e-14
47	8077817	7942717	NM_000260	MYO7A	0.695485	1.829623e-16	3.170187e-12	6.745079e-14
48	8077817	7946860	NM_000352	ABCC8	0.695294	1.879134e-16	3.255976e-12	6.783283e-14
49	8077817	7926871			0.695045	1.945762e-16	3.371422e-12	6.880453e-14
50	8077817	7916304	NM_147193	GLIS1	0.694928	1.978075e-16	3.427411e-12	6.854821e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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