[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1982	8092501	NM_000460	THPO		thrombopoietin

Fetching correlation data, please wait...
Getting list of correlations for id 1982.
Getting list of p-values for id 1982.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8092501	8072316	NM_001017437	CCDC157	0.760997	4.513424e-21	7.820411e-17	7.820411e-17
2	8092501	8046922	NM_000090	COL3A1	0.758858	6.725725e-21	1.165366e-16	5.826832e-17
3	8092501	7942123	NM_053056	CCND1	0.752805	2.034627e-20	3.525398e-16	1.175133e-16
4	8092501	7955184	NM_006262	PRPH	0.741054	1.597348e-19	2.767724e-15	6.919311e-16
5	8092501	8138450	NM_152898	FERD3L	0.740295	1.817874e-19	3.149831e-15	6.299662e-16
6	8092501	8137151	NM_198455	SSPO	0.736148	3.654699e-19	6.332497e-15	1.055416e-15
7	8092501	7949227	NM_017525	CDC42BPG	0.735929	3.790629e-19	6.568023e-15	9.382891e-16
8	8092501	7913450	NM_005529	HSPG2	0.733956	5.258878e-19	9.112058e-15	1.139007e-15
9	8092501	7931184	NM_005519	HMX2	0.727521	1.499688e-18	2.598510e-14	2.887233e-15
10	8092501	8075005	AK289871	ADORA2A	0.726748	1.697457e-18	2.941184e-14	2.941184e-15
11	8092501	8107406	ENST00000410774		0.726422	1.788204e-18	3.098422e-14	2.816747e-15
12	8092501	7897416	NM_001080397	SLC45A1	0.726196	1.853834e-18	3.212139e-14	2.676782e-15
13	8092501	7987701	NM_016642	SPTBN5	0.724368	2.478827e-18	4.295064e-14	3.303896e-15
14	8092501	7896865	NM_153254	TTLL10	0.724217	2.538741e-18	4.398877e-14	3.142055e-15
15	8092501	7956120	NM_001982	ERBB3	0.723919	2.661297e-18	4.611230e-14	3.074153e-15
16	8092501	7914667	NM_052896	CSMD2	0.723813	2.706406e-18	4.689390e-14	2.930869e-15
17	8092501	7898616	NM_022819	PLA2G2F	0.722832	3.158688e-18	5.473058e-14	3.219446e-15
18	8092501	7936144	NM_000494	COL17A1	0.722292	3.438125e-18	5.957239e-14	3.309577e-15
19	8092501	8019585	NM_030966	KRTAP1-3	0.722221	3.476589e-18	6.023886e-14	3.170466e-15
20	8092501	8015189	NM_030966	KRTAP1-3	0.722221	3.476589e-18	6.023886e-14	3.011943e-15
21	8092501	8082928	NM_001002026	CLDN18	0.719939	4.963835e-18	8.600838e-14	4.095637e-15
22	8092501	8110821	NM_001044	SLC6A3	0.718354	6.343626e-18	1.099160e-13	4.996182e-15
23	8092501	8059028	NM_194302	CCDC108	0.715844	9.323420e-18	1.615469e-13	7.023778e-15
24	8092501	8179716	NM_001264	CDSN	0.712649	1.512953e-17	2.621494e-13	1.092289e-14
25	8092501	8033674	NM_024690	MUC16	0.712440	1.561289e-17	2.705245e-13	1.082098e-14
26	8092501	7942717	NM_000260	MYO7A	0.711253	1.865650e-17	3.232612e-13	1.243312e-14
27	8092501	8173106	NM_198510	ITIH5L	0.711198	1.880976e-17	3.259167e-13	1.207099e-14
28	8092501	7959402	NM_030765	B3GNT4	0.711039	1.926415e-17	3.337899e-13	1.192107e-14
29	8092501	7936096	NM_014976	PDCD11	0.710820	1.990288e-17	3.448572e-13	1.189163e-14
30	8092501	7959921	AK098523	LOC338797	0.710786	2.000610e-17	3.466457e-13	1.155486e-14
31	8092501	8114550	NM_004883	NRG2	0.710374	2.127407e-17	3.686158e-13	1.189083e-14
32	8092501	7998629	ENST00000431136		0.710362	2.131232e-17	3.692785e-13	1.153995e-14
33	8092501	8037513	NM_138568	EXOC3L2	0.709775	2.325904e-17	4.030093e-13	1.221240e-14
34	8092501	8013042	NM_000422	KRT17	0.709378	2.467174e-17	4.274873e-13	1.257316e-14
35	8092501	8041582	NM_138370	PKDCC	0.708443	2.833407e-17	4.909443e-13	1.402698e-14
36	8092501	7915841	NM_001097611	KNCN	0.708299	2.894562e-17	5.015407e-13	1.393169e-14
37	8092501	8019578	NM_030967	KRTAP1-1	0.708095	2.983269e-17	5.169110e-13	1.397057e-14
38	8092501	8015196	NM_030967	KRTAP1-1	0.708095	2.983269e-17	5.169110e-13	1.360292e-14
39	8092501	8038109	NM_017708	FAM83E	0.707847	3.094313e-17	5.361516e-13	1.374748e-14
40	8092501	8060134	NM_004321	KIF1A	0.705403	4.428949e-17	7.674041e-13	1.918510e-14
41	8092501	8038725	NM_002776	KLK10	0.704539	5.023335e-17	8.703933e-13	2.122911e-14
42	8092501	7918394	NM_139053	EPS8L3	0.704477	5.068748e-17	8.782620e-13	2.091100e-14
43	8092501	7927383	NM_153034	ZNF488	0.703825	5.572330e-17	9.655176e-13	2.245390e-14
44	8092501	8151609	NM_172239	REXO1L1	0.703320	5.995013e-17	1.038756e-12	2.360809e-14
45	8092501	8067506	BC137326	C20orf151	0.703037	6.245670e-17	1.082187e-12	2.404861e-14
46	8092501	7928126	NM_014431	KIAA1274	0.702354	6.892240e-17	1.194219e-12	2.596127e-14
47	8092501	8006896	NM_003673	TCAP	0.702346	6.900970e-17	1.195731e-12	2.544109e-14
48	8092501	7912706	NM_004431	EPHA2	0.701862	7.399055e-17	1.282034e-12	2.670905e-14
49	8092501	7896798	NM_032129	PLEKHN1	0.701803	7.461565e-17	1.292865e-12	2.638501e-14
50	8092501	8124862	NM_001264	CDSN	0.701797	7.467825e-17	1.293950e-12	2.587900e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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