[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
6222	7998434	NM_003294	TPSAB1		tryptase alpha/beta 1
7142	7992181	NM_003294	TPSAB1		tryptase alpha/beta 1

Fetching correlation data, please wait...
Getting list of correlations for id 6222.
Getting list of p-values for id 6222.
1 of 2 done.
Getting list of correlations for id 7142.
Getting list of p-values for id 7142.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.247 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7998434	7992181	NM_003294	TPSAB1	0.993869	2.458629e-100	8.520133e-96	8.520133e-96
2	7992181	7998434	NM_003294	TPSAB1	0.993869	2.458629e-100	8.520133e-96	4.260066e-96
3	7992181	8163275	NM_001080398	KIAA0368	-0.829692	7.847986e-28	2.719641e-23	9.065471e-24
4	7992181	7949015	NM_001144936	C11orf95	0.826235	2.012382e-27	6.973710e-23	1.743428e-23
5	7992181	8038299	NM_033142	CGB7	0.824173	3.493677e-27	1.210699e-22	2.421398e-23
6	7998434	8163275	NM_001080398	KIAA0368	-0.823990	3.667639e-27	1.270984e-22	2.118306e-23
7	7998434	7949015	NM_001144936	C11orf95	0.815770	3.079958e-26	1.067329e-21	1.524755e-22
8	7992181	8121209	NM_005604	POU3F2	0.815422	3.362513e-26	1.165245e-21	1.456556e-22
9	7998434	8038299	NM_033142	CGB7	0.814246	4.516242e-26	1.565059e-21	1.738954e-22
10	7992181	7977299	NM_001112726	KIAA0284	0.812806	6.463695e-26	2.239929e-21	2.239929e-22
11	7992181	8040479	NM_182828	GDF7	0.811699	8.497721e-26	2.944800e-21	2.677091e-22
12	7992181	8137330	ENST00000356058		0.811230	9.535403e-26	3.304398e-21	2.753665e-22
13	7992181	8010696	NM_148896	NPB	0.810687	1.089353e-25	3.775045e-21	2.903881e-22
14	7992181	8019693	NM_148896	NPB	0.810687	1.089353e-25	3.775045e-21	2.696461e-22
15	7992181	8062948	NM_014276	RBPJL	0.810535	1.130692e-25	3.918301e-21	2.612201e-22
16	7992181	7935983	NM_005029	PITX3	0.810011	1.285002e-25	4.453048e-21	2.783155e-22
17	7992181	8049942	NM_080741	NEU4	0.808263	1.963745e-25	6.805160e-21	4.003035e-22
18	7998434	8121209	NM_005604	POU3F2	0.806610	2.920704e-25	1.012141e-20	5.623003e-22
19	7992181	8025621	NM_003259	ICAM5	0.806401	3.069958e-25	1.063863e-20	5.599281e-22
20	7992181	8006562	NM_033315	RASL10B	0.805897	3.462245e-25	1.199807e-20	5.999033e-22
21	7992181	7944285	NM_001655	ARCN1	-0.805439	3.859914e-25	1.337615e-20	6.369594e-22
22	7998434	8062948	NM_014276	RBPJL	0.805428	3.870706e-25	1.341354e-20	6.097066e-22
23	7992181	7900352	NM_022120	OXCT2	0.804535	4.781873e-25	1.657110e-20	7.204827e-22
24	7992181	7915257	NM_022120	OXCT2	0.804535	4.781873e-25	1.657110e-20	6.904626e-22
25	7992181	8098740	NM_033178	DUX4	0.804022	5.396434e-25	1.870080e-20	7.480321e-22
26	7992181	8074131	NM_001080420	SHANK3	0.803970	5.463140e-25	1.893197e-20	7.281525e-22
27	7998434	8137330	ENST00000356058		0.803901	5.552488e-25	1.924159e-20	7.126516e-22
28	7998434	7997264	NM_001906	CTRB1	0.803781	5.710530e-25	1.978927e-20	7.067596e-22
29	7992181	8038292	NM_033043	CGB5	0.803027	6.815969e-25	2.362006e-20	8.144848e-22
30	7998434	8040479	NM_182828	GDF7	0.802711	7.339220e-25	2.543333e-20	8.477778e-22
31	7998434	8025621	NM_003259	ICAM5	0.802583	7.562001e-25	2.620536e-20	8.453342e-22
32	7992181	8036270	NM_152658	THAP8	0.802192	8.284368e-25	2.870865e-20	8.971453e-22
33	7992181	8006063	NM_152345	ANKRD13B	0.801930	8.804644e-25	3.051161e-20	9.245943e-22
34	7998434	7977299	NM_001112726	KIAA0284	0.800909	1.115917e-24	3.867100e-20	1.137382e-21
35	7992181	8067409	NM_005560	LAMA5	0.800701	1.170750e-24	4.057116e-20	1.159176e-21
36	7998434	7935983	NM_005029	PITX3	0.800374	1.262450e-24	4.374895e-20	1.215249e-21
37	7992181	7937560	NM_002457	MUC2	0.799727	1.465435e-24	5.078318e-20	1.372518e-21
38	7992181	7911413	NM_003327	TNFRSF4	0.799634	1.496921e-24	5.187430e-20	1.365113e-21
39	7992181	7997264	NM_001906	CTRB1	0.799310	1.612488e-24	5.587915e-20	1.432799e-21
40	7998434	8006562	NM_033315	RASL10B	0.799068	1.704326e-24	5.906171e-20	1.476543e-21
41	7992181	7945536	NM_016564	CEND1	0.798837	1.796612e-24	6.225978e-20	1.518531e-21
42	7998434	7944285	NM_001655	ARCN1	-0.798767	1.825760e-24	6.326987e-20	1.506425e-21
43	7992181	8076169	NM_014293	NPTXR	0.798607	1.893876e-24	6.563037e-20	1.526288e-21
44	7992181	8030181	NM_033378	CGB2	0.798385	1.992246e-24	6.903928e-20	1.569075e-21
45	7992181	8098732	NM_033178	DUX4	0.797954	2.197695e-24	7.615892e-20	1.692420e-21
46	7992181	7997942	NM_014427	CPNE7	0.797951	2.198862e-24	7.619937e-20	1.656508e-21
47	7992181	8028407	NM_000540	RYR1	0.797631	2.365139e-24	8.196153e-20	1.743862e-21
48	7992181	8074063	NM_024866	ADM2	0.797307	2.545219e-24	8.820203e-20	1.837542e-21
49	7998434	8067409	NM_005560	LAMA5	0.797179	2.620015e-24	9.079401e-20	1.852939e-21
50	7992181	8064676	NM_145762	GFRA4	0.797003	2.726732e-24	9.449217e-20	1.889843e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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