[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1745	8034643	NM_001127221	CACNA1A		calcium channel, voltage-dependent, P/Q type, alpha 1A subunit

Fetching correlation data, please wait...
Getting list of correlations for id 1745.
Getting list of p-values for id 1745.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8034643	7945688	NR_003512	INS-IGF2	0.830826	5.736413e-28	9.939483e-24	9.939483e-24
2	8034643	7937560	NM_002457	MUC2	0.825782	2.272894e-27	3.938243e-23	1.969122e-23
3	8034643	8115691	NM_003062	SLIT3	0.824079	3.582776e-27	6.207876e-23	2.069292e-23
4	8034643	8131056	NM_017781	CYP2W1	0.817700	1.886841e-26	3.269329e-22	8.173322e-23
5	8034643	7911683	NM_182533	C1orf86	0.813433	5.531668e-26	9.584721e-22	1.916944e-22
6	8034643	7987701	NM_016642	SPTBN5	0.813166	5.911893e-26	1.024354e-21	1.707256e-22
7	8034643	8170965	NM_139250	CTAG1A	0.813121	5.977431e-26	1.035709e-21	1.479585e-22
8	8034643	8176149	NM_139250	CTAG1A	0.813121	5.977431e-26	1.035709e-21	1.294637e-22
9	8034643	8151609	NM_172239	REXO1L1	0.813024	6.123533e-26	1.061025e-21	1.178916e-22
10	8034643	7908437	NM_024529	CDC73	-0.812314	7.301576e-26	1.265144e-21	1.265144e-22
11	8034643	8067409	NM_005560	LAMA5	0.811972	7.944954e-26	1.376622e-21	1.251475e-22
12	8034643	7968265	NM_000209	PDX1	0.811708	8.478169e-26	1.469012e-21	1.224177e-22
13	8034643	8017776	NM_014877	HELZ	-0.811178	9.660205e-26	1.673824e-21	1.287557e-22
14	8034643	7955305	NM_001652	AQP6	0.810724	1.079618e-25	1.870655e-21	1.336182e-22
15	8034643	8150928	NM_003580	NSMAF	-0.810544	1.128207e-25	1.954844e-21	1.303230e-22
16	8034643	8132070	NM_002047	GARS	-0.809397	1.492057e-25	2.585287e-21	1.615804e-22
17	8034643	8091048	NR_023350	COPB2	-0.809379	1.498897e-25	2.597140e-21	1.527729e-22
18	8034643	7971820	NM_016075	VPS36	-0.808737	1.750982e-25	3.033927e-21	1.685515e-22
19	8034643	8008201	NM_002507	NGFR	0.808705	1.764812e-25	3.057889e-21	1.609415e-22
20	8034643	7942553	NM_014752	SPCS2	-0.808363	1.916702e-25	3.321070e-21	1.660535e-22
21	8034643	7978093	NM_032452	JPH4	0.807414	2.408756e-25	4.173651e-21	1.987453e-22
22	8034643	7913450	NM_005529	HSPG2	0.807356	2.442618e-25	4.232325e-21	1.923784e-22
23	8034643	7896921	NM_152228	TAS1R3	0.807199	2.536363e-25	4.394757e-21	1.910764e-22
24	8034643	7949015	NM_001144936	C11orf95	0.807084	2.607340e-25	4.517738e-21	1.882391e-22
25	8034643	8049934	NM_022134	GAL3ST2	0.805297	3.992840e-25	6.918394e-21	2.767358e-22
26	8034643	7931519	NM_152643	KNDC1	0.804971	4.312898e-25	7.472959e-21	2.874215e-22
27	8034643	8093112	NM_015562	UBXN7	-0.804682	4.618075e-25	8.001739e-21	2.963607e-22
28	8034643	8024768	NM_133475	ANKRD24	0.804548	4.766296e-25	8.258560e-21	2.949486e-22
29	8034643	7936762	NM_001001976	ATE1	-0.803140	6.637669e-25	1.150109e-20	3.965893e-22
30	8034643	8039362	NM_178837	C19orf51	0.802256	8.160518e-25	1.413973e-20	4.713243e-22
31	8034643	7913300	NM_016287	HP1BP3	-0.801538	9.645442e-25	1.671266e-20	5.391180e-22
32	8034643	8138670	NM_031243	HNRNPA2B1	-0.801474	9.788614e-25	1.696073e-20	5.300229e-22
33	8034643	8110821	NM_001044	SLC6A3	0.801328	1.012700e-24	1.754705e-20	5.317289e-22
34	8034643	8134827	NM_173564	C7orf51	0.800256	1.297268e-24	2.247777e-20	6.611109e-22
35	8034643	8049942	NM_080741	NEU4	0.799869	1.418129e-24	2.457191e-20	7.020547e-22
36	8034643	8128356	NM_012160	FBXL4	-0.799860	1.421039e-24	2.462234e-20	6.839538e-22
37	8034643	7975113	NM_145165	CHURC1	-0.799576	1.516894e-24	2.628322e-20	7.103573e-22
38	8034643	8004842	NM_173728	ARHGEF15	0.798192	2.081680e-24	3.606926e-20	9.491911e-22
39	8034643	7916443	NM_015306	USP24	-0.797994	2.177884e-24	3.773620e-20	9.675949e-22
40	8034643	7992845	NM_003456	ZNF205	0.796836	2.831444e-24	4.906043e-20	1.226511e-21
41	8034643	7937667	NM_003957	BRSK2	0.796833	2.833690e-24	4.909935e-20	1.197545e-21
42	8034643	7978718	NM_006364	SEC23A	-0.796707	2.915464e-24	5.051624e-20	1.202768e-21
43	8034643	8028407	NM_000540	RYR1	0.796075	3.361780e-24	5.824956e-20	1.354641e-21
44	8034643	8147172	NM_003909	CPNE3	-0.795927	3.475583e-24	6.022143e-20	1.368669e-21
45	8034643	7990244	NM_005477	HCN4	0.795644	3.704151e-24	6.418182e-20	1.426263e-21
46	8034643	7997264	NM_001906	CTRB1	0.794748	4.527367e-24	7.844569e-20	1.705341e-21
47	8034643	8166500	NM_003410	ZFX	-0.794458	4.829752e-24	8.368510e-20	1.780534e-21
48	8034643	7897132	NM_022114	PRDM16	0.794268	5.039001e-24	8.731077e-20	1.818974e-21
49	8034643	8079021	NM_001904	CTNNB1	-0.794223	5.089633e-24	8.818808e-20	1.799757e-21
50	8034643	7952893	BC024764	IQSEC3	0.793897	5.473218e-24	9.483445e-20	1.896689e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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