[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1753	8024816	NM_024333	FSD1		fibronectin type III and SPRY domain containing 1

Fetching correlation data, please wait...
Getting list of correlations for id 1753.
Getting list of p-values for id 1753.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8024816	8137151	NM_198455	SSPO	0.675502	2.697193e-15	4.673427e-11	4.673427e-11
2	8024816	7998407	NM_207419	C1QTNF8	0.658507	2.266084e-14	3.926445e-10	1.963222e-10
3	8024816	7967727	NM_021808	GALNT9	0.657770	2.477389e-14	4.292571e-10	1.430857e-10
4	8024816	8062539	NM_080552	SLC32A1	0.656138	3.016031e-14	5.225877e-10	1.306469e-10
5	8024816	8066451	NM_182970	RIMS4	0.655214	3.369142e-14	5.837713e-10	1.167543e-10
6	8024816	8067409	NM_005560	LAMA5	0.654114	3.842605e-14	6.658081e-10	1.109680e-10
7	8024816	8016382	NM_199262	SP6	0.654013	3.889246e-14	6.738896e-10	9.626994e-11
8	8024816	7939642	NM_052854	CREB3L1	0.653887	3.947804e-14	6.840360e-10	8.550450e-11
9	8024816	7935535	NM_018058	CRTAC1	0.653036	4.368594e-14	7.569463e-10	8.410514e-11
10	8024816	7912250	EF592573	MIR34A	0.652849	4.466313e-14	7.738781e-10	7.738781e-11
11	8024816	7900931	NM_003780	B4GALT2	0.651738	5.094361e-14	8.826999e-10	8.024545e-11
12	8024816	8055291	BC043584	C2orf27B	0.651695	5.120367e-14	8.872059e-10	7.393383e-11
13	8024816	8033462	NM_206833	CTXN1	0.650244	6.074895e-14	1.052597e-9	8.096900e-11
14	8024816	8110688	NM_004174	SLC9A3	0.649715	6.464343e-14	1.120077e-9	8.000548e-11
15	8024816	7906501	NM_000702	ATP1A2	0.648874	7.133476e-14	1.236017e-9	8.240116e-11
16	8024816	7955297	NM_001651	AQP5	0.648756	7.232255e-14	1.253133e-9	7.832081e-11
17	8024816	7934544	NM_144589	COMTD1	0.647863	8.026951e-14	1.390830e-9	8.181352e-11
18	8024816	7962703	NM_001844	COL2A1	0.645864	1.012213e-13	1.753861e-9	9.743673e-11
19	8024816	8012344	NM_032580	HES7	0.641749	1.623025e-13	2.812216e-9	1.480114e-10
20	8024816	7945688	NR_003512	INS-IGF2	0.641431	1.682923e-13	2.916000e-9	1.458000e-10
21	8024816	8158637	AL834139	HMCN2	0.638370	2.379095e-13	4.122257e-9	1.962980e-10
22	8024816	7932495	NM_001010911	C10orf114	0.638031	2.471596e-13	4.282535e-9	1.946607e-10
23	8024816	8155661	NM_199135	FOXD4L3	0.637695	2.566530e-13	4.447027e-9	1.933490e-10
24	8024816	7998910	NM_001103175	CCDC64B	0.637213	2.709043e-13	4.693959e-9	1.955816e-10
25	8024816	7992197	ENST00000429194		0.637204	2.711849e-13	4.698820e-9	1.879528e-10
26	8024816	8110783	NM_198253	TERT	0.637185	2.717565e-13	4.708724e-9	1.811048e-10
27	8024816	7973468	NM_138360	LRRC16B	0.636597	2.902200e-13	5.028642e-9	1.862460e-10
28	8024816	8012220	NM_006942	SOX15	0.635037	3.453105e-13	5.983195e-9	2.136855e-10
29	8024816	7896921	NM_152228	TAS1R3	0.633766	3.975900e-13	6.889042e-9	2.375532e-10
30	8024816	7987701	NM_016642	SPTBN5	0.633692	4.008552e-13	6.945619e-9	2.315206e-10
31	8024816	8164077	NM_004959	NR5A1	0.632008	4.826323e-13	8.362569e-9	2.697603e-10
32	8024816	8013947	NM_032854	CORO6	0.629948	6.047107e-13	1.047782e-8	3.274320e-10
33	8024816	8006679	ENST00000411344		0.629776	6.161801e-13	1.067655e-8	3.235319e-10
34	8024816	8036284	NM_001864	COX7A1	0.629566	6.304249e-13	1.092337e-8	3.212757e-10
35	8024816	8049137	NM_001631	ALPI	0.627965	7.501694e-13	1.299819e-8	3.713767e-10
36	8024816	7977418	NM_001134875	C14orf80	0.627727	7.697911e-13	1.333817e-8	3.705047e-10
37	8024816	7927028	NM_153368	GJD4	0.627503	7.886662e-13	1.366522e-8	3.693303e-10
38	8024816	7960068	NM_024078	NOC4L	0.626903	8.414812e-13	1.458034e-8	3.836933e-10
39	8024816	8029950	NM_014601	EHD2	0.626692	8.608298e-13	1.491560e-8	3.824512e-10
40	8024816	8033487	NM_032447	FBN3	0.626462	8.824007e-13	1.528936e-8	3.822339e-10
41	8024816	8017521	NM_000334	SCN4A	0.625422	9.868527e-13	1.709920e-8	4.170536e-10
42	8024816	8064242	NR_027686	NCRNA00176	0.624967	1.036184e-12	1.795397e-8	4.274754e-10
43	8024816	7949021	NM_173587	RCOR2	0.623686	1.188352e-12	2.059057e-8	4.788504e-10
44	8024816	8077185	NM_000039	APOA1	0.623235	1.246872e-12	2.160456e-8	4.910126e-10
45	8024816	8160472	NM_001004125	TUSC1	0.622651	1.326771e-12	2.298896e-8	5.108659e-10
46	8024816	8062948	NM_014276	RBPJL	0.622497	1.348623e-12	2.336759e-8	5.079911e-10
47	8024816	7937228	NM_001012508	SPRN	0.622442	1.356569e-12	2.350528e-8	5.001123e-10
48	8024816	8031499	AF086519	SSC5D	0.622200	1.391844e-12	2.411649e-8	5.024268e-10
49	8024816	8121209	NM_005604	POU3F2	0.620793	1.615355e-12	2.798926e-8	5.712093e-10
50	8024816	8116384	NM_175062	RASGEF1C	0.620499	1.666283e-12	2.887168e-8	5.774336e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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