[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6713	8148841	NM_024531	GPR172A		G protein-coupled receptor 172A

Fetching correlation data, please wait...
Getting list of correlations for id 6713.
Getting list of p-values for id 6713.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8148841	8100782			0.639222	2.161311e-13	3.744903e-9	3.744903e-9
2	8148841	8064857	ENST00000436669		-0.614339	3.168284e-12	5.489685e-8	2.744843e-8
3	8148841	7949798	NM_025124	TMEM134	0.598522	1.550080e-11	2.685824e-7	8.952746e-8
4	8148841	8030706	NM_175063	C19orf63	0.591429	3.072663e-11	5.324004e-7	1.331001e-7
5	8148841	7995328			0.578911	9.877793e-11	1.711525e-6	3.423050e-7
6	8148841	8131135	NM_018641	CHST12	0.569525	2.296763e-10	3.979601e-6	6.632669e-7
7	8148841	8118667	ENST00000416347		-0.568539	2.505756e-10	4.341724e-6	6.202462e-7
8	8148841	8110861	NM_032479	MRPL36	0.563113	4.026012e-10	6.975871e-6	8.719839e-7
9	8148841	8037853	NM_017854	TMEM160	0.547295	1.529493e-9	2.650152e-5	2.944613e-6
10	8148841	8014063	NM_006495	EVI2B	-0.547250	1.535158e-9	2.659968e-5	2.659968e-6
11	8148841	8174509	NM_005274	GNG5	-0.546567	1.623720e-9	2.813419e-5	2.557654e-6
12	8148841	7916422	NM_152268	PARS2	0.537630	3.343171e-9	5.792713e-5	4.827261e-6
13	8148841	8036004	NM_004364	CEBPA	0.533138	4.768676e-9	8.262685e-5	6.355911e-6
14	8148841	7971653	NR_002612	DLEU2	-0.522458	1.086913e-8	1.883295e-4	1.345210e-5
15	8148841	7969003	NM_021999	ITM2B	-0.521233	1.192460e-8	2.066175e-4	1.377450e-5
16	8148841	8024246	NM_017914	C19orf24	0.521220	1.193644e-8	2.068227e-4	1.292642e-5
17	8148841	7949776	NM_020441	CORO1B	0.520462	1.263870e-8	2.189908e-4	1.288181e-5
18	8148841	8126952	NM_004906	WTAP	-0.518590	1.454613e-8	2.520408e-4	1.400227e-5
19	8148841	7977775	NM_001344	DAD1	-0.510652	2.615740e-8	4.532293e-4	2.385417e-5
20	8148841	8093013	NM_005781	TNK2	0.510362	2.671686e-8	4.629231e-4	2.314615e-5
21	8148841	8055980	NM_004288	CYTIP	-0.510315	2.680897e-8	4.645190e-4	2.211995e-5
22	8148841	7983924			-0.508954	2.959729e-8	5.128322e-4	2.331056e-5
23	8148841	8062016	NM_014183	DYNLRB1	-0.508464	3.066843e-8	5.313919e-4	2.310400e-5
24	8148841	8027032	NM_001100418	C19orf60	0.507495	3.289695e-8	5.700054e-4	2.375023e-5
25	8148841	7920123	NM_002966	S100A10	-0.507390	3.314602e-8	5.743210e-4	2.297284e-5
26	8148841	7955277	NM_003217	TMBIM6	-0.506972	3.416277e-8	5.919384e-4	2.276686e-5
27	8148841	7922219	NM_000655	SELL	-0.504296	4.140205e-8	7.173734e-4	2.656938e-5
28	8148841	8158177	NM_024112	C9orf16	0.503168	4.487291e-8	7.775130e-4	2.776832e-5
29	8148841	8032996	NM_205767	C19orf70	0.503029	4.531742e-8	7.852149e-4	2.707637e-5
30	8148841	8089285			-0.502356	4.754064e-8	8.237367e-4	2.745789e-5
31	8148841	8002592	NM_001030007	AP1G1	-0.501668	4.992222e-8	8.650023e-4	2.790330e-5
32	8148841	8025506	NM_006221	PIN1	0.501251	5.141922e-8	8.909408e-4	2.784190e-5
33	8148841	7962185	NR_004854	AMN1	-0.497676	6.613548e-8	1.145929e-3	3.472514e-5
34	8148841	8068254	NM_000628	IL10RB	-0.494652	8.164804e-8	1.414716e-3	4.160928e-5
35	8148841	7901445	BC057844		0.493213	9.019208e-8	1.562758e-3	4.465023e-5
36	8148841	8122672	NM_015093	TAB2	-0.492089	9.745673e-8	1.688633e-3	4.690647e-5
37	8148841	8037505	NM_024108	TRAPPC6A	0.491994	9.809233e-8	1.699646e-3	4.593637e-5
38	8148841	8112940	NM_012446	SSBP2	-0.491356	1.024895e-7	1.775836e-3	4.673254e-5
39	8148841	8074473	NM_001130861	CLDN5	0.489784	1.141252e-7	1.977447e-3	5.070377e-5
40	8148841	7984289	NM_004663	RAB11A	-0.489508	1.162985e-7	2.015105e-3	5.037762e-5
41	8148841	7946569	NM_016422	RNF141	-0.487229	1.357809e-7	2.352675e-3	5.738232e-5
42	8148841	8099826	NM_030956	TLR10	-0.487145	1.365531e-7	2.366055e-3	5.633465e-5
43	8148841	8032057	NM_005035	POLRMT	0.486730	1.404470e-7	2.433525e-3	5.659360e-5
44	8148841	8159415	NM_024718	C9orf86	0.485964	1.478965e-7	2.562603e-3	5.824098e-5
45	8148841	8157324	NM_144488	RGS3	0.485896	1.485738e-7	2.574339e-3	5.720753e-5
46	8148841	8081667	NM_017945	SLC35A5	-0.485657	1.509916e-7	2.616231e-3	5.687458e-5
47	8148841	7945503	NM_021008	DEAF1	0.485610	1.514665e-7	2.624460e-3	5.583958e-5
48	8148841	7905067	NM_003548	HIST2H4A	-0.485218	1.555230e-7	2.694746e-3	5.614055e-5
49	8148841	7919627	NM_003548	HIST2H4A	-0.485218	1.555230e-7	2.694746e-3	5.499483e-5
50	8148841	7983922			-0.484287	1.655604e-7	2.868665e-3	5.737329e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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