[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7563	7930106	NM_024789	TMEM180		transmembrane protein 180

Fetching correlation data, please wait...
Getting list of correlations for id 7563.
Getting list of p-values for id 7563.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7930106	7950701	NM_001098816	ODZ4	0.665737	9.319514e-15	1.614792e-10	1.614792e-10
2	7930106	8019588	NM_031957	KRTAP1-5	0.659150	2.095929e-14	3.631616e-10	1.815808e-10
3	7930106	8015179	NM_031957	KRTAP1-5	0.659150	2.095929e-14	3.631616e-10	1.210539e-10
4	7930106	7970262	NM_001008895	CUL4A	-0.658892	2.162593e-14	3.747124e-10	9.367810e-11
5	7930106	7951987	NM_001077263	TMPRSS13	0.653754	4.010825e-14	6.949557e-10	1.389911e-10
6	7930106	7947609	NM_004813	PEX16	0.651172	5.446430e-14	9.437029e-10	1.572838e-10
7	7930106	7945125	BC113593	PRR10	0.639733	2.040246e-13	3.535134e-9	5.050192e-10
8	7930106	8084219	NM_017644	KLHL24	-0.638237	2.414905e-13	4.184307e-9	5.230383e-10
9	7930106	7988050	NM_201631	TGM5	0.636982	2.779976e-13	4.816864e-9	5.352071e-10
10	7930106	8056909	NM_001880	ATF2	-0.636893	2.807720e-13	4.864936e-9	4.864936e-10
11	7930106	8034469	NM_032301	FBXW9	0.634390	3.710274e-13	6.428791e-9	5.844355e-10
12	7930106	8092201	NM_024665	TBL1XR1	-0.634176	3.799426e-13	6.583265e-9	5.486054e-10
13	7930106	8033043	NM_000150	FUT6	0.631837	4.917696e-13	8.520892e-9	6.554532e-10
14	7930106	7908907	NM_000674	ADORA1	0.631722	4.980378e-13	8.629501e-9	6.163930e-10
15	7930106	7914667	NM_052896	CSMD2	0.629201	6.560118e-13	1.136672e-8	7.577811e-10
16	7930106	7955896	NM_016057	COPZ1	-0.627778	7.655141e-13	1.326406e-8	8.290039e-10
17	7930106	7964535	NM_000785	CYP27B1	0.627711	7.711240e-13	1.336127e-8	7.859568e-10
18	7930106	8015189	NM_030966	KRTAP1-3	0.626761	8.545003e-13	1.480593e-8	8.225514e-10
19	7930106	8019585	NM_030966	KRTAP1-3	0.626761	8.545003e-13	1.480593e-8	7.792593e-10
20	7930106	8042119	NM_022894	PAPOLG	-0.625977	9.297339e-13	1.610950e-8	8.054750e-10
21	7930106	7959402	NM_030765	B3GNT4	0.625447	9.842250e-13	1.705367e-8	8.120793e-10
22	7930106	7988132	NM_153700	STRC	0.624128	1.133494e-12	1.964005e-8	8.927296e-10
23	7930106	7973510	NM_006032	CPNE6	0.622600	1.334010e-12	2.311439e-8	1.004973e-9
24	7930106	8049152	NM_000751	CHRND	0.621933	1.431844e-12	2.480955e-8	1.033731e-9
25	7930106	7988963	NM_006628	ARPP19	-0.621242	1.540526e-12	2.669270e-8	1.067708e-9
26	7930106	8059028	NM_194302	CCDC108	0.620531	1.660671e-12	2.877444e-8	1.106709e-9
27	7930106	8091648	NM_007107	SSR3	-0.620284	1.704407e-12	2.953227e-8	1.093788e-9
28	7930106	8045030	NM_001080527	MYO7B	0.620274	1.706152e-12	2.956250e-8	1.055804e-9
29	7930106	7931097	NM_002775	HTRA1	0.619848	1.784417e-12	3.091860e-8	1.066159e-9
30	7930106	7912675	NM_003443	ZBTB17	0.619558	1.839716e-12	3.187676e-8	1.062559e-9
31	7930106	8062064	NM_020884	MYH7B	0.617696	2.236018e-12	3.874349e-8	1.249790e-9
32	7930106	7955589	NM_002135	NR4A1	0.616087	2.643869e-12	4.581032e-8	1.431573e-9
33	7930106	8083523	NM_003875	GMPS	-0.615467	2.819338e-12	4.885066e-8	1.480323e-9
34	7930106	7973056	NM_001641	APEX1	-0.612969	3.647952e-12	6.320806e-8	1.859061e-9
35	7930106	7937483	NR_002585	SNORA52	0.612414	3.861707e-12	6.691180e-8	1.911766e-9
36	7930106	7929664	NM_138413	DHDPSL	0.609449	5.225013e-12	9.053380e-8	2.514828e-9
37	7930106	8112121	NM_173514	SLC38A9	-0.609270	5.320347e-12	9.218565e-8	2.491504e-9
38	7930106	8074888	ENST00000412037		0.608916	5.514743e-12	9.555395e-8	2.514578e-9
39	7930106	8066757	NM_022829	SLC13A3	0.608334	5.848998e-12	1.013456e-7	2.598605e-9
40	7930106	8156247	NM_178828	C9orf79	0.607831	6.153578e-12	1.066230e-7	2.665576e-9
41	7930106	8086222	NM_001099404	SCN5A	0.607675	6.251034e-12	1.083117e-7	2.641748e-9
42	7930106	7897691	NM_020780	PTCHD2	0.607589	6.305789e-12	1.092604e-7	2.601438e-9
43	7930106	8026133	NM_152654	DAND5	0.607554	6.328270e-12	1.096499e-7	2.549999e-9
44	7930106	7992954	AK098732	TRAP1	0.606915	6.748053e-12	1.169235e-7	2.657353e-9
45	7930106	8092321	NM_020640	DCUN1D1	-0.606907	6.754080e-12	1.170279e-7	2.600621e-9
46	7930106	8163086	NM_032012	C9orf5	-0.606028	7.376890e-12	1.278194e-7	2.778682e-9
47	7930106	7949568	AK090761	LOC100131232	0.605732	7.598554e-12	1.316601e-7	2.801280e-9
48	7930106	8053872	NM_001002036	ASTL	0.605333	7.908403e-12	1.370289e-7	2.854769e-9
49	7930106	7970241	NM_000504	F10	0.604166	8.884899e-12	1.539487e-7	3.141809e-9
50	7930106	7944825	X64981	OR10D1P	0.604131	8.915543e-12	1.544796e-7	3.089592e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation