[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
2212	7988132	NM_153700	STRC		stereocilin
2311	7988177	NM_153700	STRC		stereocilin

Fetching correlation data, please wait...
Getting list of correlations for id 2212.
Getting list of p-values for id 2212.
1 of 2 done.
Getting list of correlations for id 2311.
Getting list of p-values for id 2311.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.267 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7988132	7988177	NM_153700	STRC	0.991554	3.376675e-93	1.170153e-88	1.170153e-88
2	7988177	7988132	NM_153700	STRC	0.991554	3.376675e-93	1.170153e-88	5.850765e-89
3	7988177	8067602	NM_152864	NKAIN4	0.761053	4.465927e-21	1.547623e-16	5.158742e-17
4	7988177	8008228	NM_138281	DLX4	0.758911	6.659845e-21	2.307903e-16	5.769756e-17
5	7988177	8131056	NM_017781	CYP2W1	0.756630	1.014671e-20	3.516239e-16	7.032479e-17
6	7988132	8008228	NM_138281	DLX4	0.755721	1.198541e-20	4.153423e-16	6.922371e-17
7	7988132	8067602	NM_152864	NKAIN4	0.755705	1.202049e-20	4.165581e-16	5.950830e-17
8	7988177	8160849	NM_001017363	ARID3C	0.751586	2.533272e-20	8.778801e-16	1.097350e-16
9	7988132	8060126	NM_198998	AQP12A	0.751263	2.683706e-20	9.300116e-16	1.033346e-16
10	7988177	8060126	NM_198998	AQP12A	0.750165	3.264806e-20	1.131386e-15	1.131386e-16
11	7988177	8125383	NM_004557	NOTCH4	0.749578	3.624240e-20	1.255944e-15	1.141767e-16
12	7988177	7901247	NM_172225	DMBX1	0.749573	3.626888e-20	1.256862e-15	1.047385e-16
13	7988177	8038280	NM_000737	CGB	0.748806	4.155465e-20	1.440035e-15	1.107719e-16
14	7988132	8038280	NM_000737	CGB	0.748139	4.674754e-20	1.619989e-15	1.157135e-16
15	7988132	8075200	NM_012265	RHBDD3	0.745978	6.829567e-20	2.366718e-15	1.577812e-16
16	7988177	8075200	NM_012265	RHBDD3	0.745222	7.791104e-20	2.699929e-15	1.687456e-16
17	7988132	8160849	NM_001017363	ARID3C	0.744607	8.668480e-20	3.003975e-15	1.767044e-16
18	7988132	7901247	NM_172225	DMBX1	0.744109	9.450136e-20	3.274850e-15	1.819361e-16
19	7988177	7920027	NM_007185	CELF3	0.743514	1.047266e-19	3.629197e-15	1.910104e-16
20	7988132	7959402	NM_030765	B3GNT4	0.742233	1.305473e-19	4.523985e-15	2.261993e-16
21	7988177	7959402	NM_030765	B3GNT4	0.740818	1.662855e-19	5.762458e-15	2.744027e-16
22	7988132	8131056	NM_017781	CYP2W1	0.740473	1.763621e-19	6.111653e-15	2.778024e-16
23	7988132	8028389	NM_001042522	SPRED3	0.740157	1.861005e-19	6.449127e-15	2.803968e-16
24	7988177	8069037	NM_000383	AIRE	0.739103	2.224695e-19	7.709459e-15	3.212275e-16
25	7988132	8125383	NM_004557	NOTCH4	0.738165	2.606407e-19	9.032242e-15	3.612897e-16
26	7988132	7963142	NM_012306	FAIM2	0.737622	2.855416e-19	9.895160e-15	3.805831e-16
27	7988177	8037732	NM_001029861	NANOS2	0.737521	2.904271e-19	1.006446e-14	3.727578e-16
28	7988177	7997801	NM_013278	IL17C	0.737322	3.003148e-19	1.040711e-14	3.716824e-16
29	7988177	8003939	NM_003963	TM4SF5	0.736133	3.663570e-19	1.269573e-14	4.377839e-16
30	7988177	7927367	NM_001040084	ANXA8	0.735590	4.010703e-19	1.389869e-14	4.632896e-16
31	7988177	7991939	NM_145294	WDR90	0.735280	4.222898e-19	1.463403e-14	4.720655e-16
32	7988177	7963142	NM_012306	FAIM2	0.734761	4.603038e-19	1.595137e-14	4.984803e-16
33	7988132	7920027	NM_007185	CELF3	0.734694	4.654496e-19	1.612969e-14	4.887785e-16
34	7988177	8028389	NM_001042522	SPRED3	0.734118	5.119991e-19	1.774282e-14	5.218476e-16
35	7988177	8053728	NM_000798	DRD5	0.733944	5.268984e-19	1.825914e-14	5.216896e-16
36	7988132	8069037	NM_000383	AIRE	0.733714	5.472878e-19	1.896571e-14	5.268254e-16
37	7988132	8135099	NM_133457	EMID2	0.733607	5.571065e-19	1.930597e-14	5.217830e-16
38	7988132	8026900	NM_002248	KCNN1	0.733127	6.029461e-19	2.089449e-14	5.498551e-16
39	7988132	7997801	NM_013278	IL17C	0.732795	6.367360e-19	2.206545e-14	5.657808e-16
40	7988132	8053728	NM_000798	DRD5	0.732544	6.635473e-19	2.299457e-14	5.748642e-16
41	7988177	7958577	NM_032829	C12orf34	0.732485	6.699866e-19	2.321772e-14	5.662858e-16
42	7988132	8049729	NM_198998	AQP12A	0.732149	7.078970e-19	2.453146e-14	5.840825e-16
43	7988177	8135099	NM_133457	EMID2	0.731687	7.635099e-19	2.645867e-14	6.153179e-16
44	7988177	8026900	NM_002248	KCNN1	0.731679	7.646238e-19	2.649727e-14	6.022107e-16
45	7988132	8003939	NM_003963	TM4SF5	0.731519	7.847909e-19	2.719614e-14	6.043588e-16
46	7988177	8157818	NM_001045476	WDR38	0.731176	8.300356e-19	2.876405e-14	6.253055e-16
47	7988177	8028407	NM_000540	RYR1	0.730676	9.004808e-19	3.120526e-14	6.639418e-16
48	7988132	8038292	NM_033043	CGB5	0.729993	1.006225e-18	3.486974e-14	7.264528e-16
49	7988177	8049729	NM_198998	AQP12A	0.729714	1.052743e-18	3.648175e-14	7.445254e-16
50	7988177	8013112	NM_016084	RASD1	0.729147	1.154070e-18	3.999313e-14	7.998627e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation