[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
617	8009145	NM_030779	KCNH6		potassium voltage-gated channel, subfamily H (eag-related), member 6

Fetching correlation data, please wait...
Getting list of correlations for id 617.
Getting list of p-values for id 617.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8009145	8133704	NM_001110199	SRRM3	0.795272	4.026332e-24	6.976425e-20	6.976425e-20
2	8009145	7937560	NM_002457	MUC2	0.790936	1.051737e-23	1.822344e-19	9.111719e-20
3	8009145	7949033	NM_014067	MACROD1	0.786780	2.584873e-23	4.478810e-19	1.492937e-19
4	8009145	7977418	NM_001134875	C14orf80	0.785766	3.208696e-23	5.559707e-19	1.389927e-19
5	8009145	8032699	NM_015174	ZFR2	0.782526	6.356313e-23	1.101358e-18	2.202717e-19
6	8009145	8125234	NM_019105	TNXB	0.782420	6.499018e-23	1.126085e-18	1.876808e-19
7	8009145	7998724	NM_020764	CASKIN1	0.781697	7.556594e-23	1.309331e-18	1.870473e-19
8	8009145	8024605	NM_021938	CELF5	0.781256	8.283520e-23	1.435285e-18	1.794107e-19
9	8009145	7935983	NM_005029	PITX3	0.779486	1.194372e-22	2.069489e-18	2.299432e-19
10	8009145	8075200	NM_012265	RHBDD3	0.776927	2.015736e-22	3.492666e-18	3.492666e-19
11	8009145	8006562	NM_033315	RASL10B	0.776776	2.078283e-22	3.601040e-18	3.273673e-19
12	8009145	8067409	NM_005560	LAMA5	0.776281	2.297755e-22	3.981321e-18	3.317767e-19
13	8009145	8064014	NM_022082	SLC17A9	0.776074	2.396028e-22	4.151597e-18	3.193536e-19
14	8009145	8008228	NM_138281	DLX4	0.773629	3.916775e-22	6.786596e-18	4.847568e-19
15	8009145	8075865	NM_153609	TMPRSS6	0.772737	4.678732e-22	8.106839e-18	5.404559e-19
16	8009145	7945688	NR_003512	INS-IGF2	0.772467	4.935900e-22	8.552433e-18	5.345271e-19
17	8009145	8153101	NM_152888	COL22A1	0.771171	6.378798e-22	1.105254e-17	6.501496e-19
18	8009145	8112121	NM_173514	SLC38A9	-0.770793	6.872345e-22	1.190771e-17	6.615395e-19
19	8009145	8120698	NM_133645	MTO1	-0.768183	1.144942e-21	1.983841e-17	1.044127e-18
20	8009145	8044263	NM_006267	RANBP2	-0.768035	1.178312e-21	2.041662e-17	1.020831e-18
21	8009145	7955305	NM_001652	AQP6	0.767920	1.204914e-21	2.087755e-17	9.941690e-19
22	8009145	8024754	NM_032607	CREB3L3	0.767308	1.356606e-21	2.350592e-17	1.068451e-18
23	8009145	8125568	NM_080680	COL11A2	0.767069	1.420763e-21	2.461756e-17	1.070329e-18
24	8009145	7918313	NM_001010985	MYBPHL	0.766790	1.499610e-21	2.598374e-17	1.082656e-18
25	8009145	8116195	NM_173465	COL23A1	0.765562	1.898961e-21	3.290330e-17	1.316132e-18
26	8009145	8153322	NM_015193	ARC	0.763875	2.620922e-21	4.541271e-17	1.746643e-18
27	8009145	8096556	NM_015143	METAP1	-0.763796	2.660623e-21	4.610062e-17	1.707430e-18
28	8009145	7966690	NM_016569	TBX3	0.763391	2.873078e-21	4.978182e-17	1.777922e-18
29	8009145	8109403	NR_024152	MFAP3	-0.762673	3.291703e-21	5.703534e-17	1.966736e-18
30	8009145	7987701	NM_016642	SPTBN5	0.761731	3.931619e-21	6.812316e-17	2.270772e-18
31	8009145	7921936	NM_177398	LMX1A	0.761684	3.966933e-21	6.873504e-17	2.217259e-18
32	8009145	8027556	NM_002333	LRP3	0.761641	3.999134e-21	6.929300e-17	2.165406e-18
33	8009145	7992302	NM_020825	CRAMP1L	0.761518	4.092666e-21	7.091362e-17	2.148898e-18
34	8009145	8153704	NM_031309	SCRT1	0.760996	4.514259e-21	7.821857e-17	2.300546e-18
35	8009145	8159036	NM_139025	ADAMTS13	0.760308	5.134247e-21	8.896109e-17	2.541745e-18
36	8009145	8156415	NM_006648	WNK2	0.759246	6.257664e-21	1.084265e-16	3.011848e-18
37	8009145	8083523	NM_003875	GMPS	-0.759163	6.356080e-21	1.101318e-16	2.976535e-18
38	8009145	8086985	NM_000094	COL7A1	0.758853	6.731947e-21	1.166444e-16	3.069591e-18
39	8009145	7981447	NM_001100119	XRCC3	0.758843	6.745052e-21	1.168715e-16	2.996706e-18
40	8009145	8110382	NM_030567	PRR7	0.758203	7.593344e-21	1.315699e-16	3.289247e-18
41	8009145	8134827	NM_173564	C7orf51	0.757083	9.335645e-21	1.617587e-16	3.945335e-18
42	8009145	8032312	NM_138813	ATP8B3	0.756700	1.001706e-20	1.735656e-16	4.132514e-18
43	8009145	8045381	NM_058241	CCNT2	-0.756181	1.101720e-20	1.908950e-16	4.439418e-18
44	8009145	8093440	NM_001004356	FGFRL1	0.756037	1.131146e-20	1.959937e-16	4.454402e-18
45	8009145	8039362	NM_178837	C19orf51	0.755501	1.247661e-20	2.161822e-16	4.804050e-18
46	8009145	8033956	NM_004230	S1PR2	0.755130	1.334985e-20	2.313128e-16	5.028539e-18
47	8009145	7914361	NM_001856	COL16A1	0.755070	1.349592e-20	2.338437e-16	4.975399e-18
48	8009145	8074316	NR_003267	GGT3P	0.754566	1.479245e-20	2.563087e-16	5.339766e-18
49	8009145	7927367	NM_001040084	ANXA8	0.754425	1.517849e-20	2.629977e-16	5.367300e-18
50	8009145	7977033	NM_030943	AMN	0.754285	1.556751e-20	2.697382e-16	5.394763e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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