[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
5063	7967067	NM_001037495	DYNLL1		dynein, light chain, LC8-type 1
12182	7980535	NM_001037494	DYNLL1		dynein, light chain, LC8-type 1
13371	7959164	NM_001037495	DYNLL1		dynein, light chain, LC8-type 1

Fetching correlation data, please wait...
Getting list of correlations for id 5063.
Getting list of p-values for id 5063.
1 of 3 done.
Getting list of correlations for id 12182.
Getting list of p-values for id 12182.
2 of 3 done.
Getting list of correlations for id 13371.
Getting list of p-values for id 13371.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.283 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7967067	8133704	NM_001110199	SRRM3	0.736199	3.623463e-19	1.883512e-14	1.883512e-14
2	7967067	7959850	NM_007197	FZD10	0.717516	7.217844e-18	3.751907e-13	1.875954e-13
3	7980535	7965515	NM_018838	NDUFA12	0.713149	1.403322e-17	7.294608e-13	2.431536e-13
4	7967067	7927854	NM_012207	HNRNPH3	-0.709073	2.581159e-17	1.341712e-12	3.354281e-13
5	7967067	7903541	NM_007269	STXBP3	-0.707154	3.426787e-17	1.781278e-12	3.562556e-13
6	7967067	7902687	NM_001554	CYR61	0.707035	3.487287e-17	1.812726e-12	3.021211e-13
7	7967067	7957177	NM_014999	RAB21	-0.705781	4.190850e-17	2.178446e-12	3.112065e-13
8	7980535	7947934	NM_014342	MTCH2	0.704480	5.066468e-17	2.633601e-12	3.292001e-13
9	7967067	8046590	NM_194247	HNRNPA3	-0.703266	6.041685e-17	3.140528e-12	3.489476e-13
10	7967067	8152041	NM_183419	RNF19A	-0.702301	6.945581e-17	3.610383e-12	3.610383e-13
11	7967067	7927367	NM_001040084	ANXA8	0.700932	8.455825e-17	4.395422e-12	3.995839e-13
12	7967067	8158554	NM_016307	PRRX2	0.700900	8.493856e-17	4.415191e-12	3.679326e-13
13	7967067	7908978	NM_014827	ZC3H11A	-0.699977	9.692813e-17	5.038421e-12	3.875708e-13
14	7967067	7975113	NM_145165	CHURC1	-0.699405	1.051661e-16	5.466640e-12	3.904743e-13
15	7967067	7927307	NM_001630	ANXA8L2	0.697699	1.339775e-16	6.964284e-12	4.642856e-13
16	7980535	8174636	NM_006937	SUMO2	0.696047	1.690999e-16	8.789981e-12	5.493738e-13
17	7967067	7898910	NM_017761	PNRC2	-0.695709	1.773083e-16	9.216662e-12	5.421566e-13
18	7967067	8039933	NM_017761	PNRC2	-0.695709	1.773083e-16	9.216662e-12	5.120368e-13
19	7967067	8052024	NM_025133	FBXO11	-0.693630	2.370560e-16	1.232241e-11	6.485479e-13
20	7980535	8018288	NM_006356	ATP5H	0.691239	3.300038e-16	1.715393e-11	8.576964e-13
21	7967067	8089234	NM_014415	ZBTB11	-0.690856	3.478679e-16	1.808252e-11	8.610725e-13
22	7967067	8115691	NM_003062	SLIT3	0.690229	3.791941e-16	1.971089e-11	8.959494e-13
23	7967067	8078187	NM_015184	PLCL2	-0.689444	4.221990e-16	2.194633e-11	9.541882e-13
24	7967067	8035506	NM_004750	CRLF1	0.688655	4.702273e-16	2.444289e-11	1.018454e-12
25	7967067	8151842	NM_015496	KIAA1429	-0.688467	4.824345e-16	2.507743e-11	1.003097e-12
26	7967067	8035249	NM_005234	NR2F6	0.687967	5.163816e-16	2.684203e-11	1.032386e-12
27	7967067	7930454	NM_145341	PDCD4	-0.687412	5.568391e-16	2.894505e-11	1.072039e-12
28	7967067	8027222	NM_153221	CILP2	0.687340	5.622875e-16	2.922827e-11	1.043867e-12
29	7967067	7945688	NR_003512	INS-IGF2	0.687314	5.642970e-16	2.933272e-11	1.011473e-12
30	7967067	7942553	NM_014752	SPCS2	-0.687050	5.848114e-16	3.039908e-11	1.013303e-12
31	7967067	7949931	NM_017635	SUV420H1	-0.686880	5.984620e-16	3.110865e-11	1.003505e-12
32	7967067	8150714	NM_052937	PCMTD1	-0.686816	6.036033e-16	3.137590e-11	9.804970e-13
33	7967067	8170326	NM_002024	FMR1	-0.686780	6.065844e-16	3.153087e-11	9.554808e-13
34	7967067	7989323	NM_004330	BNIP2	-0.685419	7.288853e-16	3.788819e-11	1.114359e-12
35	7967067	7908437	NM_024529	CDC73	-0.684554	8.186941e-16	4.255654e-11	1.215901e-12
36	7967067	7911683	NM_182533	C1orf86	0.684340	8.424721e-16	4.379254e-11	1.216460e-12
37	7967067	8090237	NM_021964	ZNF148	-0.684251	8.526320e-16	4.432067e-11	1.197856e-12
38	7967067	8091048	NR_023350	COPB2	-0.683994	8.824744e-16	4.587190e-11	1.207155e-12
39	7967067	8109403	NR_024152	MFAP3	-0.683446	9.494755e-16	4.935469e-11	1.265505e-12
40	7967067	7990269	BC111368	C15orf59	0.682266	1.111044e-15	5.775318e-11	1.443829e-12
41	7967067	7973745	NM_005249	FOXG1	0.682162	1.126508e-15	5.855701e-11	1.428220e-12
42	7967067	8066637	AK097925	FLJ40606	0.681586	1.215952e-15	6.320639e-11	1.504914e-12
43	7967067	7902771	NM_016009	SH3GLB1	-0.681352	1.254270e-15	6.519820e-11	1.516237e-12
44	7967067	8074131	NM_001080420	SHANK3	0.681208	1.278398e-15	6.645240e-11	1.510282e-12
45	7967067	8088700	NM_007114	TMF1	-0.681098	1.297127e-15	6.742593e-11	1.498354e-12
46	7967067	8083183	NM_001080415	SR140	-0.680468	1.409805e-15	7.328306e-11	1.593110e-12
47	7967067	7932285	NM_024948	FAM188A	-0.679885	1.522351e-15	7.913331e-11	1.683688e-12
48	7967067	8055672	NM_015702	MMADHC	-0.679649	1.570385e-15	8.163019e-11	1.700629e-12
49	7967067	8144505	NM_194284	CLDN23	0.679475	1.606715e-15	8.351865e-11	1.704462e-12
50	7967067	8093826	NM_000683	ADRA2C	0.679454	1.611151e-15	8.374926e-11	1.674985e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation