[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6542	7943795	NM_080659	C11orf52		chromosome 11 open reading frame 52

Fetching correlation data, please wait...
Getting list of correlations for id 6542.
Getting list of p-values for id 6542.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7943795	7913450	NM_005529	HSPG2	0.768892	9.974704e-22	1.728317e-17	1.728317e-17
2	7943795	8110821	NM_001044	SLC6A3	0.749941	3.397299e-20	5.886499e-16	2.943250e-16
3	7943795	8179070	NM_033229	TRIM15	0.742118	1.331531e-19	2.307143e-15	7.690477e-16
4	7943795	8177760	NM_033229	TRIM15	0.742118	1.331531e-19	2.307143e-15	5.767858e-16
5	7943795	8117849	NM_033229	TRIM15	0.742118	1.331531e-19	2.307143e-15	4.614286e-16
6	7943795	7952766	ENST00000417822		0.740686	1.700786e-19	2.946953e-15	4.911588e-16
7	7943795	7998414	ENST00000428636		0.739966	1.922379e-19	3.330907e-15	4.758438e-16
8	7943795	8042335	NM_003375	VDAC2	-0.739082	2.232732e-19	3.868655e-15	4.835819e-16
9	7943795	8017488	NM_022640	CSH1	0.738475	2.473626e-19	4.286052e-15	4.762280e-16
10	7943795	8110894	NM_017755	NSUN2	-0.738274	2.558792e-19	4.433619e-15	4.433619e-16
11	7943795	8151842	NM_015496	KIAA1429	-0.738008	2.676280e-19	4.637190e-15	4.215628e-16
12	7943795	7987701	NM_016642	SPTBN5	0.736696	3.335245e-19	5.778978e-15	4.815815e-16
13	7943795	7977216	NM_015656	KIF26A	0.735383	4.151199e-19	7.192782e-15	5.532910e-16
14	7943795	7995332			0.734775	4.591848e-19	7.956295e-15	5.683068e-16
15	7943795	7947744	NM_002334	LRP4	0.733852	5.349505e-19	9.269087e-15	6.179391e-16
16	7943795	7911413	NM_003327	TNFRSF4	0.733827	5.371783e-19	9.307688e-15	5.817305e-16
17	7943795	8029458	NM_001039213	CEACAM16	0.733797	5.398995e-19	9.354839e-15	5.502846e-16
18	7943795	7905507	NM_178428	LCE2A	0.732909	6.248876e-19	1.082743e-14	6.015237e-16
19	7943795	8067409	NM_005560	LAMA5	0.732474	6.712015e-19	1.162991e-14	6.121005e-16
20	7943795	8113981	NM_004199	P4HA2	0.730715	8.948488e-19	1.550505e-14	7.752523e-16
21	7943795	7936762	NM_001001976	ATE1	-0.729083	1.166030e-18	2.020380e-14	9.620855e-16
22	7943795	8089729	NM_001015887	IGSF11	0.728384	1.305342e-18	2.261767e-14	1.028076e-15
23	7943795	7945786	NM_005969	NAP1L4	-0.727203	1.578046e-18	2.734281e-14	1.188818e-15
24	7943795	8038565	ENST00000430752		0.726994	1.631846e-18	2.827500e-14	1.178125e-15
25	7943795	8052200	NM_001003937	TSPYL6	0.726687	1.714024e-18	2.969890e-14	1.187956e-15
26	7943795	7942553	NM_014752	SPCS2	-0.726480	1.771661e-18	3.069757e-14	1.180676e-15
27	7943795	8010583	NR_027255	LOC388428	0.726325	1.815941e-18	3.146481e-14	1.165363e-15
28	7943795	7903321	NM_001130841	RTCD1	-0.725720	1.999905e-18	3.465236e-14	1.237584e-15
29	7943795	8072436	NM_001002837	INPP5J	0.724123	2.576680e-18	4.464613e-14	1.539522e-15
30	7943795	8132070	NM_002047	GARS	-0.722611	3.270509e-18	5.666811e-14	1.888937e-15
31	7943795	8046922	NM_000090	COL3A1	0.722579	3.286964e-18	5.695322e-14	1.837201e-15
32	7943795	7896921	NM_152228	TAS1R3	0.722399	3.381083e-18	5.858402e-14	1.830751e-15
33	7943795	8010768			0.722392	3.384741e-18	5.864741e-14	1.777194e-15
34	7943795	8129675			0.721912	3.649408e-18	6.323329e-14	1.859803e-15
35	7943795	8047641	NM_177538	CYP20A1	-0.720953	4.239271e-18	7.345385e-14	2.098681e-15
36	7943795	8148333	NM_015137	EFR3A	-0.720274	4.712508e-18	8.165362e-14	2.268156e-15
37	7943795	7913300	NM_016287	HP1BP3	-0.719768	5.097312e-18	8.832113e-14	2.387057e-15
38	7943795	7987325	NM_014691	AQR	-0.718174	6.522819e-18	1.130209e-13	2.974234e-15
39	7943795	7996393	NM_001755	CBFB	-0.718156	6.540600e-18	1.133290e-13	2.905871e-15
40	7943795	8073799	NM_013236	ATXN10	-0.717845	6.861171e-18	1.188835e-13	2.972088e-15
41	7943795	7906852	NM_175866	UHMK1	-0.716850	7.994539e-18	1.385214e-13	3.378570e-15
42	7943795	7913938	NM_001039775	AIM1L	0.716761	8.104437e-18	1.404256e-13	3.343466e-15
43	7943795	7964250	NM_006601	PTGES3	-0.716264	8.744918e-18	1.515232e-13	3.523795e-15
44	7943795	8157804	NM_182487	OLFML2A	0.715608	9.665153e-18	1.674681e-13	3.806094e-15
45	7943795	8051622	NM_001031684	SRSF7	-0.715544	9.759943e-18	1.691105e-13	3.758012e-15
46	7943795	7941505	NM_001323	CST6	0.715407	9.966437e-18	1.726885e-13	3.754097e-15
47	7943795	7941709	NM_002896	RBM4	-0.714836	1.086995e-17	1.883435e-13	4.007309e-15
48	7943795	8087907	NM_020163	SEMA3G	0.714701	1.109430e-17	1.922310e-13	4.004813e-15
49	7943795	8097373	BC034253	C4orf29	-0.714203	1.196496e-17	2.073168e-13	4.230955e-15
50	7943795	8094030	NM_198595	AFAP1	0.712915	1.453532e-17	2.518535e-13	5.037071e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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