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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
984 7948900 NR_002561 SNORD30 link to infopage small nucleolar RNA, C/D box 30

Fetching correlation data, please wait...
Getting list of correlations for id 984.
Getting list of p-values for id 984.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7948900 8009205 NM_007372 DDX42 link to infopage 0.716900 7.933082e-18 1.374565e-13 1.374565e-13
2 7948900 7948908 NR_002564 SNORD26 link to infopage 0.709414 2.453909e-17 4.251888e-13 2.125944e-13
3 7948900 8024238 NM_001280 CIRBP link to infopage 0.709163 2.546985e-17 4.413161e-13 1.471054e-13
4 7948900 8002729 NR_027264 GLG1 link to infopage 0.706679 3.674118e-17 6.366145e-13 1.591536e-13
5 7948900 8128138 NM_014611 MDN1 link to infopage 0.698215 1.245357e-16 2.157830e-12 4.315661e-13
6 7948900 8063242 NM_006420 ARFGEF2 link to infopage 0.694504 2.098778e-16 3.636553e-12 6.060922e-13
7 7948900 7912808 NM_001102663 NBPF16 link to infopage 0.688739 4.649028e-16 8.055371e-12 1.150767e-12
8 7948900 8172914 NM_031407 HUWE1 link to infopage 0.687627 5.407756e-16 9.370018e-12 1.171252e-12
9 7948900 7919351 NM_183372 NBPF11 link to infopage 0.687338 5.624585e-16 9.745718e-12 1.082858e-12
10 7948900 7919271 NM_183372 NBPF11 link to infopage 0.685182 7.524893e-16 1.303838e-11 1.303838e-12
11 7948900 8133610 NM_001013739 STAG3L3 link to infopage 0.679717 1.556382e-15 2.696742e-11 2.451584e-12
12 7948900 7905171 NM_004698 PRPF3 link to infopage 0.678918 1.728598e-15 2.995141e-11 2.495951e-12
13 7948900 7909455 NM_025228 TRAF3IP3 link to infopage 0.678615 1.798567e-15 3.116377e-11 2.397213e-12
14 7948900 8163023 NM_003640 IKBKAP link to infopage 0.678208 1.896900e-15 3.286759e-11 2.347685e-12
15 7948900 7995421 NM_031490 LONP2 link to infopage 0.677998 1.949823e-15 3.378458e-11 2.252305e-12
16 7948900 8140196 NM_001025202 STAG3L2 link to infopage 0.677235 2.153942e-15 3.732135e-11 2.332584e-12
17 7948900 7972069 NM_015057 MYCBP2 link to infopage 0.676221 2.457430e-15 4.257988e-11 2.504699e-12
18 7948900 8079842 NM_005777 RBM6 link to infopage 0.675779 2.602414e-15 4.509203e-11 2.505113e-12
19 7948900 7904574 NM_001039703 NBPF10 link to infopage 0.675380 2.740213e-15 4.747968e-11 2.498930e-12
20 7948900 8040985 NM_032434 ZNF512 link to infopage 0.675037 2.864566e-15 4.963434e-11 2.481717e-12
21 7948900 7904976 NM_001102663 NBPF16 link to infopage 0.673538 3.474115e-15 6.019599e-11 2.866476e-12
22 7948900 7987248 NR_027410 GOLGA8B link to infopage 0.673154 3.649727e-15 6.323881e-11 2.874492e-12
23 7948900 8101324 NM_031370 HNRNPD link to infopage 0.673140 3.656448e-15 6.335528e-11 2.754577e-12
24 7948900 7969935 NM_000123 ERCC5 link to infopage 0.672493 3.972287e-15 6.882782e-11 2.867826e-12
25 7948900 7904999 NM_001102663 NBPF16 link to infopage 0.671848 4.313080e-15 7.473274e-11 2.989310e-12
26 7948900 8139977 NM_001013739 STAG3L3 link to infopage 0.670075 5.403963e-15 9.363446e-11 3.601325e-12
27 7948900 8154793 NM_002504 NFX1 link to infopage 0.668207 6.841132e-15 1.185363e-10 4.390233e-12
28 7948900 7919438 NM_001102663 NBPF16 link to infopage 0.667414 7.557519e-15 1.309491e-10 4.676754e-12
29 7948900 7987279 NR_027410 GOLGA8B link to infopage 0.666751 8.210961e-15 1.422713e-10 4.905908e-12
30 7948900 8040479 NM_182828 GDF7 link to infopage -0.665930 9.098272e-15 1.576458e-10 5.254859e-12
31 7948900 8053909 NM_014014 SNRNP200 link to infopage 0.664154 1.134418e-14 1.965607e-10 6.340667e-12
32 7948900 8116297 NM_005520 HNRNPH1 link to infopage 0.663191 1.277895e-14 2.214209e-10 6.919404e-12
33 7948900 7995069 NM_004960 FUS link to infopage 0.661460 1.580996e-14 2.739392e-10 8.301188e-12
34 7948900 7964642 BC136288 C12orf61 link to infopage -0.661122 1.647884e-14 2.855289e-10 8.397908e-12
35 7948900 8006531 NM_144975 SLFN5 link to infopage 0.661118 1.648706e-14 2.856713e-10 8.162037e-12
36 7948900 8114628 NM_002109 HARS link to infopage 0.659250 2.070663e-14 3.587837e-10 9.966214e-12
37 7948900 7910752 NM_000254 MTR link to infopage 0.658612 2.237444e-14 3.876819e-10 1.047789e-11
38 7948900 8170863 NR_000011 SNORA70 link to infopage 0.657169 2.663988e-14 4.615891e-10 1.214708e-11
39 7948900 8025498 NR_000011 SNORA70 link to infopage 0.657084 2.691250e-14 4.663129e-10 1.195674e-11
40 7948900 7982154 NR_002824 HERC2P2 link to infopage 0.656367 2.933946e-14 5.083648e-10 1.270912e-11
41 7948900 8142100 NM_020725 ATXN7L1 link to infopage 0.656258 2.972599e-14 5.150622e-10 1.256249e-11
42 7948900 8063636 NM_001001433 STX16 link to infopage 0.654354 3.733927e-14 6.469775e-10 1.540423e-11
43 7948900 7989516 NM_003922 HERC1 link to infopage 0.653635 4.068048e-14 7.048707e-10 1.639234e-11
44 7948900 7908732 NM_018085 IPO9 link to infopage 0.653342 4.212467e-14 7.298942e-10 1.658850e-11
45 7948900 8145636 NM_024567 HMBOX1 link to infopage 0.653188 4.289972e-14 7.433234e-10 1.651830e-11
46 7948900 7982957 NM_001080541 MGA link to infopage 0.651142 5.465831e-14 9.470645e-10 2.058836e-11
47 7948900 8066303 NM_032221 CHD6 link to infopage 0.650963 5.582418e-14 9.672655e-10 2.058012e-11
48 7948900 8146171 NM_001556 IKBKB link to infopage 0.648440 7.504622e-14 1.300326e-9 2.709012e-11
49 7948900 7971820 NM_016075 VPS36 link to infopage 0.647952 7.943277e-14 1.376332e-9 2.808840e-11
50 7948900 8041149 NM_015131 WDR43 link to infopage 0.647837 8.050401e-14 1.394893e-9 2.789786e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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