[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5889	8021154	NM_001142397	KIAA0427		KIAA0427

Fetching correlation data, please wait...
Getting list of correlations for id 5889.
Getting list of p-values for id 5889.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8021154	7914580	NM_153756	FNDC5	0.700384	9.144828e-17	1.584524e-12	1.584524e-12
2	8021154	8148658	NM_014789	ZNF623	-0.688546	4.772490e-16	8.269293e-12	4.134647e-12
3	8021154	8036155	NM_021232	PRODH2	0.678182	1.903410e-15	3.298038e-11	1.099346e-11
4	8021154	8024768	NM_133475	ANKRD24	0.668744	6.393540e-15	1.107809e-10	2.769522e-11
5	8021154	8062695	NM_006275	SRSF6	-0.664004	1.155797e-14	2.002649e-10	4.005298e-11
6	8021154	8158666	AK128680	HMCN2	0.652493	4.658943e-14	8.072551e-10	1.345425e-10
7	8021154	7898627	NM_001039500	VWA5B1	0.651194	5.432515e-14	9.412919e-10	1.344703e-10
8	8021154	8071357	AB051440	LOC440792	0.648555	7.404138e-14	1.282915e-9	1.603644e-10
9	8021154	7917156	NM_003902	FUBP1	-0.646996	8.878382e-14	1.538357e-9	1.709286e-10
10	8021154	7964388	NM_020142	NDUFA4L2	0.645401	1.067833e-13	1.850234e-9	1.850234e-10
11	8021154	8010903	NM_006987	RPH3AL	0.644279	1.215157e-13	2.105503e-9	1.914093e-10
12	8021154	7921462	NM_001013661	VSIG8	0.644240	1.220551e-13	2.114849e-9	1.762374e-10
13	8021154	7987701	NM_016642	SPTBN5	0.643786	1.285930e-13	2.228130e-9	1.713946e-10
14	8021154	8144703			0.643527	1.324639e-13	2.295203e-9	1.639430e-10
15	8021154	8090639	NM_014602	PIK3R4	-0.643506	1.327838e-13	2.300745e-9	1.533830e-10
16	8021154	8141303			0.643269	1.364382e-13	2.364064e-9	1.477540e-10
17	8021154	8085195	NM_198560	LHFPL4	0.643230	1.370523e-13	2.374705e-9	1.396885e-10
18	8021154	7906307	NM_018240	KIRREL	0.642371	1.511862e-13	2.619604e-9	1.455336e-10
19	8021154	8067409	NM_005560	LAMA5	0.640915	1.784462e-13	3.091937e-9	1.627335e-10
20	8021154	8131709	NM_003112	SP4	-0.640621	1.844942e-13	3.196731e-9	1.598365e-10
21	8021154	7920744	NM_000298	PKLR	0.640370	1.898273e-13	3.289138e-9	1.566256e-10
22	8021154	8170562	NM_175742	MAGEA2	0.640040	1.970649e-13	3.414543e-9	1.552065e-10
23	8021154	8175815	NM_001039582	PNCK	0.639872	2.008269e-13	3.479728e-9	1.512925e-10
24	8021154	8115691	NM_003062	SLIT3	0.638487	2.348047e-13	4.068462e-9	1.695192e-10
25	8021154	8127787	NM_015525	IBTK	-0.637794	2.538038e-13	4.397659e-9	1.759063e-10
26	8021154	8087116	NM_001008269	TMEM89	0.637486	2.627311e-13	4.552341e-9	1.750900e-10
27	8021154	7936762	NM_001001976	ATE1	-0.636856	2.819503e-13	4.885354e-9	1.809390e-10
28	8021154	7904086	NM_014813	LRIG2	-0.636332	2.989330e-13	5.179611e-9	1.849861e-10
29	8021154	7946860	NM_000352	ABCC8	0.635186	3.396609e-13	5.885304e-9	2.029415e-10
30	8021154	8175732	NM_175742	MAGEA2	0.635139	3.414399e-13	5.916128e-9	1.972043e-10
31	8021154	7917754	NM_003567	BCAR3	0.634404	3.704514e-13	6.418812e-9	2.070585e-10
32	8021154	8091039	NM_001013650	PRR23B	0.633873	3.929179e-13	6.808089e-9	2.127528e-10
33	8021154	8086810	NM_003074	SMARCC1	-0.633725	3.993810e-13	6.920075e-9	2.096992e-10
34	8021154	8003719	NM_001098202	HIC1	0.633400	4.140180e-13	7.173690e-9	2.109909e-10
35	8021154	8120698	NM_133645	MTO1	-0.632856	4.396267e-13	7.617411e-9	2.176403e-10
36	8021154	7896921	NM_152228	TAS1R3	0.630725	5.555182e-13	9.625464e-9	2.673740e-10
37	8021154	8024754	NM_032607	CREB3L3	0.630293	5.823934e-13	1.009113e-8	2.727333e-10
38	8021154	8033462	NM_206833	CTXN1	0.630022	5.998625e-13	1.039382e-8	2.735215e-10
39	8021154	8125568	NM_080680	COL11A2	0.629299	6.490593e-13	1.124625e-8	2.883654e-10
40	8021154	7955297	NM_001651	AQP5	0.628765	6.878476e-13	1.191833e-8	2.979584e-10
41	8021154	7916304	NM_147193	GLIS1	0.628727	6.907268e-13	1.196822e-8	2.919079e-10
42	8021154	8086985	NM_000094	COL7A1	0.628327	7.213390e-13	1.249864e-8	2.975867e-10
43	8021154	8084496	NM_003741	CHRD	0.628128	7.370407e-13	1.277070e-8	2.969931e-10
44	8021154	8094520	NM_032456	PCDH7	0.627706	7.715355e-13	1.336840e-8	3.038272e-10
45	8021154	8013465	NM_005557	KRT16	0.627697	7.722650e-13	1.338104e-8	2.973564e-10
46	8021154	7925972	NM_005185	CALML3	0.626635	8.661081e-13	1.500705e-8	3.262403e-10
47	8021154	7960464	NM_000552	VWF	0.626038	9.237055e-13	1.600505e-8	3.405329e-10
48	8021154	7922400	ENST00000363840		-0.626008	9.266755e-13	1.605651e-8	3.345106e-10
49	8021154	8114550	NM_004883	NRG2	0.625895	9.379266e-13	1.625145e-8	3.316623e-10
50	8021154	8032224	NM_152482	C19orf25	0.625461	9.827320e-13	1.702780e-8	3.405559e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation