[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1983	7971027	NM_013338	ALG5		asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 1983.
Getting list of p-values for id 1983.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7971027	8052562	NM_006430	CCT4	0.804576	4.735812e-25	8.205741e-21	8.205741e-21
2	7971027	7942914	NM_152991	EED	0.799323	1.607457e-24	2.785241e-20	1.392620e-20
3	7971027	8092564	NM_004593	TRA2B	0.795965	3.446001e-24	5.970886e-20	1.990295e-20
4	7971027	8091190	NM_001184	ATR	0.790523	1.150987e-23	1.994315e-19	4.985788e-20
5	7971027	7924351	NM_004446	EPRS	0.785295	3.546440e-23	6.144916e-19	1.228983e-19
6	7971027	7969935	NM_000123	ERCC5	0.782579	6.285876e-23	1.089154e-18	1.815256e-19
7	7971027	8006573	NM_139215	TAF15	0.779627	1.160364e-22	2.010563e-18	2.872233e-19
8	7971027	7927936	NM_004728	DDX21	0.775572	2.651910e-22	4.594965e-18	5.743706e-19
9	7971027	8091562	NM_020865	DHX36	0.775150	2.886924e-22	5.002173e-18	5.557970e-19
10	7971027	8132943	NM_001762	CCT6A	0.773703	3.858962e-22	6.686423e-18	6.686423e-19
11	7971027	8066136	NM_002895	RBL1	0.771801	5.633073e-22	9.760425e-18	8.873114e-19
12	7971027	8027416	NM_003796	C19orf2	0.769664	8.578212e-22	1.486347e-17	1.238622e-18
13	7971027	8121734	NM_014034	ASF1A	0.769082	9.610657e-22	1.665239e-17	1.280953e-18
14	7971027	7903281	NM_012243	SLC35A3	0.767832	1.225656e-21	2.123694e-17	1.516924e-18
15	7971027	8136631	NM_003143	SSBP1	0.767658	1.267833e-21	2.196775e-17	1.464517e-18
16	7971027	8097262	NM_145207	SPATA5	0.766984	1.444299e-21	2.502537e-17	1.564085e-18
17	7971027	8053763	NM_031902	MRPS5	0.765770	1.824566e-21	3.161426e-17	1.859662e-18
18	7971027	8128472	NM_006828	ASCC3	0.765071	2.086366e-21	3.615046e-17	2.008359e-18
19	7971027	8020323	NM_003799	RNMT	0.764237	2.446535e-21	4.239112e-17	2.231111e-18
20	7971027	7975068	NM_001123329	ZBTB1	0.763657	2.731590e-21	4.733026e-17	2.366513e-18
21	7971027	7938448	NM_017944	USP47	0.763161	3.001190e-21	5.200163e-17	2.476268e-18
22	7971027	8146482	NM_024831	TGS1	0.762278	3.547003e-21	6.145893e-17	2.793588e-18
23	7971027	8028186	NM_007145	ZNF146	0.761057	4.462183e-21	7.731624e-17	3.361576e-18
24	7971027	8047641	NM_177538	CYP20A1	0.758758	6.851972e-21	1.187241e-16	4.946838e-18
25	7971027	8020058	NM_021074	NDUFV2	0.757918	8.004665e-21	1.386968e-16	5.547873e-18
26	7971027	8039068	NM_021074	NDUFV2	0.757359	8.873364e-21	1.537488e-16	5.913415e-18
27	7971027	8023165	NM_032124	HDHD2	0.756994	9.490304e-21	1.644385e-16	6.090314e-18
28	7971027	8043861	NM_015904	EIF5B	0.756772	9.886614e-21	1.713054e-16	6.118048e-18
29	7971027	8155770	NM_015110	SMC5	0.756004	1.138142e-20	1.972059e-16	6.800203e-18
30	7971027	7934852	NM_005271	GLUD1	0.755507	1.246226e-20	2.159335e-16	7.197784e-18
31	7971027	7969114	NM_031915	SETDB2	0.754634	1.461075e-20	2.531605e-16	8.166468e-18
32	7971027	7979223	NM_001160148	DDHD1	0.753986	1.643490e-20	2.847674e-16	8.898982e-18
33	7971027	7953878	NM_001004419	CLEC2D	0.753504	1.793596e-20	3.107764e-16	9.417466e-18
34	7971027	8092328	NM_020166	MCCC1	0.753220	1.887798e-20	3.270988e-16	9.620551e-18
35	7971027	8023063	NM_001001937	ATP5A1	0.753053	1.945813e-20	3.371511e-16	9.632887e-18
36	7971027	8129706	NM_006620	HBS1L	0.752195	2.270855e-20	3.934711e-16	1.092975e-17
37	7971027	8131479	NM_019005	MIOS	0.750620	3.010341e-20	5.216017e-16	1.409734e-17
38	7971027	8099860	NM_002913	RFC1	0.750149	3.274157e-20	5.673131e-16	1.492929e-17
39	7971027	7954279	NM_153207	AEBP2	0.749164	3.900273e-20	6.758003e-16	1.732821e-17
40	7971027	8005501	NM_001135036	FAM18B2	0.748812	4.150895e-20	7.192255e-16	1.798064e-17
41	7971027	8133030	NM_002040	GABPA	0.748106	4.701716e-20	8.146663e-16	1.986991e-17
42	7971027	8113733	NM_153223	CEP120	0.747349	5.371545e-20	9.307276e-16	2.216018e-17
43	7971027	8114455	NM_004134	HSPA9	0.746959	5.752746e-20	9.967784e-16	2.318089e-17
44	7971027	8052526	NM_003400	XPO1	0.746670	6.051259e-20	1.048502e-15	2.382958e-17
45	7971027	8088219	NM_001112736	C3orf63	0.746452	6.285926e-20	1.089162e-15	2.420361e-17
46	7971027	8174893	NM_001081550	THOC2	0.746260	6.501338e-20	1.126487e-15	2.448885e-17
47	7971027	8109368	NM_005754	G3BP1	0.746250	6.511977e-20	1.128330e-15	2.400702e-17
48	7971027	8105633	NM_015342	PPWD1	0.746218	6.548791e-20	1.134709e-15	2.363977e-17
49	7971027	8047038	NM_000534	PMS1	0.746150	6.627061e-20	1.148271e-15	2.343410e-17
50	7971027	8047097	NM_014905	GLS	0.745782	7.066800e-20	1.224464e-15	2.448929e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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