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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id Label1 AccNum GeneSym Info Gene Name
6397 7934729 NM_006333 C1D link to infopage C1D nuclear receptor corepressor
6538 7934731 NM_006333 C1D link to infopage C1D nuclear receptor corepressor
8451 8052698 NM_006333 C1D link to infopage C1D nuclear receptor corepressor
10929 7932964 NM_006333 C1D link to infopage C1D nuclear receptor corepressor

Fetching correlation data, please wait...
Getting list of correlations for id 6397.
Getting list of p-values for id 6397.
1 of 4 done.
Getting list of correlations for id 6538.
Getting list of p-values for id 6538.
2 of 4 done.
Getting list of correlations for id 8451.
Getting list of p-values for id 8451.
3 of 4 done.
Getting list of correlations for id 10929.
Getting list of p-values for id 10929.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.449 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8052698 7932964 NM_006333 C1D link to infopage 0.978675 1.272967e-72 8.822683e-68 8.822683e-68
2 7932964 8052698 NM_006333 C1D link to infopage 0.978675 1.272967e-72 8.822683e-68 4.411341e-68
3 7934729 7934731 NM_006333 C1D link to infopage 0.875448 2.669213e-34 1.849978e-29 6.166593e-30
4 7934731 7934729 NM_006333 C1D link to infopage 0.875448 2.669213e-34 1.849978e-29 4.624945e-30
5 7932964 7934731 NM_006333 C1D link to infopage 0.873757 5.113743e-34 3.544233e-29 7.088466e-30
6 7934731 7932964 NM_006333 C1D link to infopage 0.873757 5.113743e-34 3.544233e-29 5.907055e-30
7 8052698 7934731 NM_006333 C1D link to infopage 0.855190 3.665065e-31 2.540183e-26 3.628833e-27
8 7934731 8052698 NM_006333 C1D link to infopage 0.855190 3.665065e-31 2.540183e-26 3.175229e-27
9 7932964 7934729 NM_006333 C1D link to infopage 0.808525 1.843508e-25 1.277699e-20 1.419665e-21
10 7934729 7932964 NM_006333 C1D link to infopage 0.808525 1.843508e-25 1.277699e-20 1.277699e-21
11 7934729 8052698 NM_006333 C1D link to infopage 0.781437 7.977895e-23 5.529320e-18 5.026654e-19
12 8052698 7934729 NM_006333 C1D link to infopage 0.781437 7.977895e-23 5.529320e-18 4.607766e-19
13 8052698 8001185 NM_005880 DNAJA2 link to infopage 0.762869 3.172179e-21 2.198574e-16 1.691211e-17
14 8052698 8098414 NM_021928 SPCS3 link to infopage 0.759111 6.416654e-21 4.447255e-16 3.176610e-17
15 8052698 7974566 NM_018229 MUDENG link to infopage 0.755315 1.290829e-20 8.946476e-16 5.964318e-17
16 8052698 7917148 NM_022831 AIDA link to infopage 0.752843 2.020794e-20 1.400572e-15 8.753574e-17
17 8052698 7974229 NM_014315 KLHDC2 link to infopage 0.751364 2.636032e-20 1.826981e-15 1.074695e-16
18 8052698 8165478 NM_173691 TPRN link to infopage -0.748660 4.264038e-20 2.955319e-15 1.641844e-16
19 8052698 7975224 NM_004094 EIF2S1 link to infopage 0.748072 4.729951e-20 3.278234e-15 1.725387e-16
20 8052698 8112728 NM_001089704 RAP1BL link to infopage 0.747487 5.242685e-20 3.633600e-15 1.816800e-16
21 8052698 8048703 NM_032338 LLPH link to infopage 0.746188 6.583078e-20 4.562600e-15 2.172667e-16
22 8052698 7975113 NM_145165 CHURC1 link to infopage 0.744919 8.212324e-20 5.691798e-15 2.587181e-16
23 8052698 8122182 NM_004865 TBPL1 link to infopage 0.743609 1.030254e-19 7.140483e-15 3.104558e-16
24 8052698 7908543 NM_133494 NEK7 link to infopage 0.743590 1.033718e-19 7.164494e-15 2.985206e-16
25 8052698 8041122 NM_002709 PPP1CB link to infopage 0.741763 1.415003e-19 9.807104e-15 3.922842e-16
26 8052698 8063283 NM_001316 CSE1L link to infopage 0.741535 1.471306e-19 1.019733e-14 3.922048e-16
27 8052698 7954503 NM_004264 MED21 link to infopage 0.740689 1.699955e-19 1.178205e-14 4.363720e-16
28 8052698 7908421 NM_004600 TROVE2 link to infopage 0.740662 1.707675e-19 1.183556e-14 4.226984e-16
29 8052698 7974587 NM_018477 ACTR10 link to infopage 0.740061 1.891327e-19 1.310841e-14 4.520142e-16
30 8052698 7924172 NM_015471 NSL1 link to infopage 0.739764 1.989135e-19 1.378629e-14 4.595431e-16
31 8052698 8041000 NM_007266 GPN1 link to infopage 0.739263 2.165511e-19 1.500873e-14 4.841525e-16
32 8052698 8047339 NR_026584 BZW1L1 link to infopage 0.738358 2.522913e-19 1.748581e-14 5.464315e-16
33 8052698 7903321 NM_001130841 RTCD1 link to infopage 0.737649 2.842578e-19 1.970134e-14 5.970103e-16
34 8052698 7954492 NM_015633 FGFR1OP2 link to infopage 0.737574 2.878911e-19 1.995316e-14 5.868576e-16
35 8052698 8094704 NM_005339 UBE2K link to infopage 0.735460 4.098537e-19 2.840614e-14 8.116041e-16
36 8052698 7984112 NM_016530 RAB8B link to infopage 0.735179 4.294639e-19 2.976528e-14 8.268134e-16
37 8052698 7975645 NM_021188 ZNF410 link to infopage 0.734922 4.481506e-19 3.106042e-14 8.394709e-16
38 8052698 8082911 NM_006153 NCK1 link to infopage 0.734862 4.526392e-19 3.137152e-14 8.255662e-16
39 8052698 8124273 NM_030939 C6orf62 link to infopage 0.734708 4.643452e-19 3.218284e-14 8.252009e-16
40 8052698 7928300 NM_173473 ANAPC16 link to infopage 0.734464 4.834678e-19 3.350819e-14 8.377046e-16
41 8052698 7939137 NM_006360 EIF3M link to infopage 0.734292 4.974489e-19 3.447719e-14 8.409071e-16
42 8052698 7971550 NM_014166 MED4 link to infopage 0.734026 5.198429e-19 3.602927e-14 8.578399e-16
43 8052698 7906662 NM_016406 UFC1 link to infopage 0.733913 5.296655e-19 3.671005e-14 8.537222e-16
44 8052698 7917455 NM_004261 SEP15 link to infopage 0.732325 6.877742e-19 4.766825e-14 1.083369e-15
45 8052698 8003939 NM_003963 TM4SF5 link to infopage -0.730914 8.662523e-19 6.003822e-14 1.334183e-15
46 8052698 8132070 NM_002047 GARS link to infopage 0.730832 8.778999e-19 6.084549e-14 1.322728e-15
47 8052698 7968199 NM_001260 CDK8 link to infopage 0.730768 8.871182e-19 6.148439e-14 1.308178e-15
48 8052698 8088718 NM_003968 UBA3 link to infopage 0.730712 8.952707e-19 6.204942e-14 1.292696e-15
49 7932964 8098414 NM_021928 SPCS3 link to infopage 0.730600 9.116454e-19 6.318432e-14 1.289476e-15
50 7932964 8165478 NM_173691 TPRN link to infopage -0.729869 1.026641e-18 7.115441e-14 1.423088e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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