[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4356	7954407	NM_018686	CMAS		cytidine monophosphate N-acetylneuraminic acid synthetase

Fetching correlation data, please wait...
Getting list of correlations for id 4356.
Getting list of p-values for id 4356.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7954407	7973067	NM_000270	PNP	0.729523	1.085871e-18	1.881488e-14	1.881488e-14
2	7954407	8156750	NM_006401	ANP32B	0.699879	9.829509e-17	1.703159e-12	8.515795e-13
3	7954407	7918813	NM_002524	NRAS	0.678688	1.781332e-15	3.086514e-11	1.028838e-11
4	7954407	7968199	NM_001260	CDK8	0.674231	3.178146e-15	5.506773e-11	1.376693e-11
5	7954407	7946439	NM_020644	TMEM9B	0.670741	4.965755e-15	8.604163e-11	1.720833e-11
6	7954407	7906662	NM_016406	UFC1	0.667928	7.084849e-15	1.227592e-10	2.045986e-11
7	7954407	8085263	NM_018447	TMEM111	0.665244	9.908995e-15	1.716932e-10	2.452759e-11
8	7954407	8039961	NR_024080	ACP1	0.663365	1.250672e-14	2.167039e-10	2.708798e-11
9	7954407	8127158	NM_001498	GCLC	0.663275	1.264748e-14	2.191428e-10	2.434920e-11
10	7954407	8106181	NM_001037637	BTF3	0.658828	2.179610e-14	3.776610e-10	3.776610e-11
11	7954407	8108847	NM_183401	RNF14	0.650971	5.576829e-14	9.662972e-10	8.784520e-11
12	7954407	7917148	NM_022831	AIDA	0.649864	6.352320e-14	1.100666e-9	9.172220e-11
13	7954407	8067288	NM_001001977	ATP5E	0.648959	7.063019e-14	1.223809e-9	9.413917e-11
14	7954407	8115849			-0.648437	7.506837e-14	1.300710e-9	9.290783e-11
15	7954407	7954492	NM_015633	FGFR1OP2	0.646850	9.029215e-14	1.564492e-9	1.042995e-10
16	7954407	8077770	NM_018462	C3orf10	0.646001	9.962520e-14	1.726206e-9	1.078879e-10
17	7954407	7978997	NM_198794	MAP4K5	0.645566	1.047619e-13	1.815209e-9	1.067770e-10
18	7954407	8092321	NM_020640	DCUN1D1	0.644354	1.204643e-13	2.087284e-9	1.159602e-10
19	7954407	7905544	NM_005987	SPRR1A	-0.644288	1.213937e-13	2.103388e-9	1.107047e-10
20	7954407	8013094	NM_003653	COPS3	0.643993	1.255705e-13	2.175760e-9	1.087880e-10
21	7954407	7979732	NM_006370	VTI1B	0.641622	1.646697e-13	2.853231e-9	1.358681e-10
22	7954407	7959597	NM_006815	TMED2	0.639787	2.027846e-13	3.513648e-9	1.597113e-10
23	7954407	8142878	NM_139286	CDC26	0.639703	2.046995e-13	3.546827e-9	1.542099e-10
24	7954407	8115158	NM_001025071	RPS14	0.638086	2.456158e-13	4.255786e-9	1.773244e-10
25	7954407	8135250	NM_002803	PSMC2	0.636277	3.008002e-13	5.211965e-9	2.084786e-10
26	7954407	7950391	NM_173582	PGM2L1	0.635945	3.121488e-13	5.408602e-9	2.080231e-10
27	7954407	8088167	NM_021237	SELK	0.635319	3.346762e-13	5.798935e-9	2.147754e-10
28	7954407	7965343	NM_172240	POC1B	0.634912	3.501434e-13	6.066935e-9	2.166763e-10
29	7954407	8005191	BC027986	NCRNA00188	0.633695	4.007294e-13	6.943438e-9	2.394289e-10
30	7954407	8107259	NM_138773	SLC25A46	0.631519	5.092665e-13	8.824061e-9	2.941354e-10
31	7954407	8083826	NM_003262	SEC62	0.630422	5.742471e-13	9.949980e-9	3.209671e-10
32	7954407	8108620	NM_144723	ZMAT2	0.629832	6.124163e-13	1.061134e-8	3.316043e-10
33	7954407	8081348	NM_020357	PCNP	0.627984	7.486675e-13	1.297216e-8	3.930958e-10
34	7954407	8088526	NM_025075	THOC7	0.625813	9.462597e-13	1.639584e-8	4.822306e-10
35	7954407	8104760	NM_152295	TARS	0.624513	1.087834e-12	1.884890e-8	5.385399e-10
36	7954407	8120251	NM_033480	FBXO9	0.623912	1.159987e-12	2.009909e-8	5.583081e-10
37	7954407	7919715	NM_030920	ANP32E	0.623079	1.267664e-12	2.196482e-8	5.936438e-10
38	7954407	7897404	NM_007262	PARK7	0.622550	1.341104e-12	2.323731e-8	6.115081e-10
39	7954407	8104825	NM_018321	BRIX1	0.620625	1.644130e-12	2.848784e-8	7.304575e-10
40	7954407	8010768			-0.619558	1.839771e-12	3.187771e-8	7.969428e-10
41	7954407	7908867	NM_138391	TMEM183A	0.619029	1.944895e-12	3.369919e-8	8.219314e-10
42	7954407	8049574	NM_080678	UBE2F	0.618820	1.987894e-12	3.444423e-8	8.201007e-10
43	7954407	7983606	NM_014335	EID1	0.618497	2.056424e-12	3.563165e-8	8.286431e-10
44	7954407	7990566	NM_000126	ETFA	0.617470	2.289312e-12	3.966690e-8	9.015205e-10
45	7954407	7975645	NM_021188	ZNF410	0.617238	2.345547e-12	4.064129e-8	9.031397e-10
46	7954407	8065566	NM_001037500	DEFB124	-0.616437	2.549367e-12	4.417288e-8	9.602801e-10
47	7954407	7951077	NM_144665	SESN3	0.615545	2.796807e-12	4.846028e-8	1.031070e-9
48	7954407	7958000	NM_020244	CHPT1	0.615192	2.900792e-12	5.026202e-8	1.047125e-9
49	7954407	8084345	NM_004068	AP2M1	0.614589	3.087423e-12	5.349579e-8	1.091751e-9
50	7954407	7929132	NM_032373	PCGF5	0.614116	3.241720e-12	5.616928e-8	1.123386e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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