[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5071	7930194	NM_017649	CNNM2		cyclin M2

Fetching correlation data, please wait...
Getting list of correlations for id 5071.
Getting list of p-values for id 5071.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7930194	8162533	NM_001083603	PTCH1	0.451326	1.350979e-6	2.340841e-2	2.340841e-2
2	7930194	8073081	NM_145298	APOBEC3F	0.439342	2.749153e-6	4.763457e-2	2.381729e-2
3	7930194	8027398	NM_024310	PLEKHF1	0.435321	3.468226e-6	6.009395e-2	2.003132e-2
4	7930194	7922793	NM_005717	ARPC5	-0.430820	4.482993e-6	7.767683e-2	1.941921e-2
5	7930194	7903753	NM_000848	GSTM2	0.428613	5.077450e-6	8.797698e-2	1.759540e-2
6	7930194	8153920	NM_021061	ZNF250	0.412502	1.227574e-5	2.127017e-1	3.545029e-2
7	7930194	7983132	AK122666	STARD9	0.406003	1.730655e-5	2.998707e-1	4.283867e-2
8	7930194	8145085	NM_001722	POLR3D	0.404205	1.900737e-5	3.293406e-1	4.116758e-2
9	7930194	8127051	NM_012288	TRAM2	0.387113	4.513657e-5	7.820814e-1	8.689793e-2
10	7930194	8062981	NM_015937	PIGT	0.385779	4.819301e-5	8.350403e-1	8.350403e-2
11	7930194	8167125	NM_004651	USP11	0.384337	5.171197e-5	8.960132e-1	8.145575e-2
12	7930194	8071768	NM_003073	SMARCB1	0.383956	5.268109e-5	9.128052e-1	7.606710e-2
13	7930194	8066964	NM_199129	TMEM189	0.383876	5.288789e-5	9.163884e-1	7.049142e-2
14	7930194	7937749	NM_006757	TNNT3	0.381612	5.902924e-5	1.022800e+0	7.305712e-2
15	7930194	7967202	NM_019034	RHOF	0.380113	6.345549e-5	1.099493e+0	7.329955e-2
16	7930194	8116595	NM_020135	WRNIP1	0.379683	6.478226e-5	1.122482e+0	7.015513e-2
17	7930194	7994541	NM_014387	LAT	0.373436	8.719751e-5	1.510871e+0	8.887478e-2
18	7930194	8049847	NM_014808	FARP2	0.370218	1.013830e-4	1.756663e+0	9.759237e-2
19	7930194	8143697	NM_152411	ZNF786	0.367138	1.169458e-4	2.026320e+0	1.066484e-1
20	7930194	8167347	NM_003173	SUV39H1	0.366427	1.208388e-4	2.093774e+0	1.046887e-1
21	7930194	7908409	NM_002923	RGS2	-0.366347	1.212805e-4	2.101428e+0	1.000680e-1
22	7930194	8075106	NM_003595	TPST2	0.365737	1.247307e-4	2.161208e+0	9.823673e-2
23	7930194	8142993	ENST00000431248		0.364819	1.300918e-4	2.254101e+0	9.800440e-2
24	7930194	8079153	NM_016006	ABHD5	-0.363427	1.386312e-4	2.402063e+0	1.000860e-1
25	7930194	8019194	NM_025161	C17orf70	0.362387	1.453481e-4	2.518447e+0	1.007379e-1
26	7930194	8019263	NM_004309	ARHGDIA	0.362176	1.467460e-4	2.542668e+0	9.779494e-2
27	7930194	7908003	NM_030769	NPL	-0.361660	1.502213e-4	2.602885e+0	9.640315e-2
28	7930194	8012257	NM_000546	TP53	0.361146	1.537566e-4	2.664140e+0	9.514785e-2
29	7930194	8118734	NM_002224	ITPR3	0.359968	1.621565e-4	2.809686e+0	9.688572e-2
30	7930194	8074780	NM_013313	YPEL1	0.359459	1.659152e-4	2.874812e+0	9.582706e-2
31	7930194	8077595	NM_001003694	BRPF1	0.358701	1.716608e-4	2.974367e+0	9.594734e-2
32	7930194	7934885	NM_018363	RNLS	0.357452	1.815357e-4	3.145470e+0	9.829593e-2
33	7930194	7941136	NM_013265	C11orf2	0.357439	1.816432e-4	3.147333e+0	9.537371e-2
34	7930194	8133331	NM_172020	POM121	0.355611	1.970528e-4	3.414334e+0	1.004216e-1
35	7930194	8003824	NM_004937	CTNS	0.355235	2.003727e-4	3.471857e+0	9.919592e-2
36	7930194	8067040	NM_012340	NFATC2	0.354370	2.081971e-4	3.607432e+0	1.002064e-1
37	7930194	7916282	NM_004631	LRP8	0.354327	2.085954e-4	3.614332e+0	9.768466e-2
38	7930194	8146550	NM_005625	SDCBP	-0.354278	2.090499e-4	3.622207e+0	9.532123e-2
39	7930194	7982187	NM_005503	APBA2	0.354007	2.115664e-4	3.665810e+0	9.399514e-2
40	7930194	8147040	NM_001105539	ZBTB10	0.353935	2.122428e-4	3.677531e+0	9.193828e-2
41	7930194	8158725	NM_005157	ABL1	0.353399	2.173171e-4	3.765454e+0	9.184034e-2
42	7930194	8077786	NM_001570	IRAK2	0.352255	2.285407e-4	3.959924e+0	9.428391e-2
43	7930194	8087833	NM_001947	DUSP7	0.351476	2.364870e-4	4.097610e+0	9.529325e-2
44	7930194	7921144	NM_001161441	SH2D2A	0.350380	2.480985e-4	4.298803e+0	9.770007e-2
45	7930194	7979757	NM_015346	ZFYVE26	0.350156	2.505368e-4	4.341052e+0	9.646782e-2
46	7930194	7967486	NM_025140	CCDC92	0.349450	2.583595e-4	4.476594e+0	9.731727e-2
47	7930194	8143188	NM_194071	CREB3L2	0.349411	2.587977e-4	4.484187e+0	9.540824e-2
48	7930194	7955045	BC008360	FAM113B	0.348619	2.678545e-4	4.641116e+0	9.668991e-2
49	7930194	8086842	NM_002375	MAP4	0.347317	2.833954e-4	4.910392e+0	1.002121e-1
50	7930194	7970096	NM_005537	ING1	-0.346891	2.886522e-4	5.001476e+0	1.000295e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation