[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2138	7962250	NM_153634	CPNE8		copine VIII

Fetching correlation data, please wait...
Getting list of correlations for id 2138.
Getting list of p-values for id 2138.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7962250	8052269	NM_001135597	CCDC88A	0.791282	9.749231e-24	1.689249e-19	1.689249e-19
2	7962250	7974303	NM_030755	TMX1	0.773751	3.822635e-22	6.623479e-18	3.311740e-18
3	7962250	8147848	NM_181354	OXR1	0.773585	3.950928e-22	6.845773e-18	2.281924e-18
4	7962250	8020903	NM_020474	GALNT1	0.769049	9.672706e-22	1.675990e-17	4.189975e-18
5	7962250	7927786	NM_001001330	REEP3	0.766049	1.729495e-21	2.996696e-17	5.993392e-18
6	7962250	8142452	NM_012252	TFEC	0.765227	2.024891e-21	3.508528e-17	5.847546e-18
7	7962250	7938592	NM_032228	FAR1	0.765002	2.114188e-21	3.663253e-17	5.233219e-18
8	7962250	7929562	NM_014803	ZNF518A	0.761248	4.305478e-21	7.460101e-17	9.325126e-18
9	7962250	8154178	NM_004972	JAK2	0.756701	1.001509e-20	1.735315e-16	1.928128e-17
10	7962250	8135625	NM_006136	CAPZA2	0.752263	2.243348e-20	3.887049e-16	3.887049e-17
11	7962250	8041236	NM_014946	SPAST	0.750440	3.108574e-20	5.386226e-16	4.896569e-17
12	7962250	7993872	NM_003366	UQCRC2	0.747403	5.320861e-20	9.219456e-16	7.682880e-17
13	7962250	8046604	NM_003659	AGPS	0.746281	6.477396e-20	1.122338e-15	8.633373e-17
14	7962250	7910550	NM_005999	TSNAX	0.744004	9.622895e-20	1.667359e-15	1.190971e-16
15	7962250	8046726	NM_001130445	SSFA2	0.743069	1.130762e-19	1.959272e-15	1.306181e-16
16	7962250	8146717	NM_013257	SGK3	0.740938	1.629249e-19	2.823000e-15	1.764375e-16
17	7962250	7976080	NM_003608	GPR65	0.740870	1.648169e-19	2.855782e-15	1.679872e-16
18	7962250	7957260	NM_006851	GLIPR1	0.740071	1.888405e-19	3.272039e-15	1.817799e-16
19	7962250	7948455	NM_152852	MS4A6A	0.739225	2.179294e-19	3.776062e-15	1.987401e-16
20	7962250	7902308	NM_003838	FPGT	0.738969	2.275829e-19	3.943328e-15	1.971664e-16
21	7962250	7923141	NM_144977	DENND1B	0.737034	3.151429e-19	5.460482e-15	2.600229e-16
22	7962250	7927267	NM_019054	FAM35A	0.736657	3.356965e-19	5.816614e-15	2.643915e-16
23	7962250	7934278	NM_000917	P4HA1	0.735991	3.751476e-19	6.500182e-15	2.826166e-16
24	7962250	8151549	NM_005536	IMPA1	0.735522	4.056502e-19	7.028700e-15	2.928625e-16
25	7962250	7974483	NM_182926	KTN1	0.733900	5.307261e-19	9.195892e-15	3.678357e-16
26	7962250	8081055	NM_014043	CHMP2B	0.733272	5.887078e-19	1.020054e-14	3.923285e-16
27	7962250	8135497	NM_021994	ZNF277	0.732958	6.198861e-19	1.074077e-14	3.978062e-16
28	7962250	8131975	NM_006024	TAX1BP1	0.732862	6.297993e-19	1.091253e-14	3.897333e-16
29	7962250	8168691	NM_006729	DIAPH2	0.732682	6.487071e-19	1.124015e-14	3.875913e-16
30	7962250	7932703	NM_145698	ACBD5	0.732421	6.770381e-19	1.173104e-14	3.910346e-16
31	7962250	8050302	NM_004850	ROCK2	0.731628	7.709722e-19	1.335863e-14	4.309237e-16
32	7962250	7961654	NM_002907	RECQL	0.731603	7.740786e-19	1.341246e-14	4.191394e-16
33	7962250	7984112	NM_016530	RAB8B	0.731383	8.025061e-19	1.390502e-14	4.213644e-16
34	7962250	7901867	NM_003368	USP1	0.730501	9.265213e-19	1.605384e-14	4.721716e-16
35	7962250	8146243	NM_032410	HOOK3	0.730234	9.676182e-19	1.676592e-14	4.790263e-16
36	7962250	8017210	NM_003916	AP1S2	0.729277	1.129999e-18	1.957949e-14	5.438746e-16
37	7962250	7936567	NM_014904	RAB11FIP2	0.728323	1.318058e-18	2.283799e-14	6.172429e-16
38	7962250	7978570	NM_021249	SNX6	0.728283	1.326674e-18	2.298728e-14	6.049284e-16
39	7962250	7980940	NM_004993	ATXN3	0.725348	2.122033e-18	3.676847e-14	9.427813e-16
40	7962250	8084146	NM_001013439	FXR1	0.725088	2.211352e-18	3.831609e-14	9.579023e-16
41	7962250	7926283	NM_003675	PRPF18	0.724789	2.318765e-18	4.017724e-14	9.799327e-16
42	7962250	8045933	NM_004180	TANK	0.724592	2.392461e-18	4.145416e-14	9.870039e-16
43	7962250	8106303	NM_016218	POLK	0.723807	2.708663e-18	4.693300e-14	1.091465e-15
44	7962250	7903908	NM_006090	CEPT1	0.723032	3.060881e-18	5.303589e-14	1.205361e-15
45	7962250	8140942	NM_001040057	FAM133B	0.723013	3.070045e-18	5.319467e-14	1.182104e-15
46	7962250	8079392	NM_001123396	CCR2	0.722090	3.549064e-18	6.149464e-14	1.336840e-15
47	7962250	8106479	NM_004866	SCAMP1	0.720588	4.487308e-18	7.775158e-14	1.654289e-15
48	7962250	7902166	NM_020948	MIER1	0.720426	4.602493e-18	7.974740e-14	1.661404e-15
49	7962250	7969228	NM_001004127	ALG11	0.720211	4.758953e-18	8.245838e-14	1.682824e-15
50	7962250	7927799	ENST00000298249		0.719082	5.669432e-18	9.823425e-14	1.964685e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation