[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2409	8142452	NM_012252	TFEC		transcription factor EC

Fetching correlation data, please wait...
Getting list of correlations for id 2409.
Getting list of p-values for id 2409.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8142452	7962250	NM_153634	CPNE8	0.765227	2.024891e-21	3.508528e-17	3.508528e-17
2	8142452	8140967	NM_017654	SAMD9	0.725997	1.913624e-18	3.315737e-14	1.657868e-14
3	8142452	7974303	NM_030755	TMX1	0.721395	3.956499e-18	6.855425e-14	2.285142e-14
4	8142452	8081069	NM_018293	ZNF654	0.714654	1.117489e-17	1.936273e-13	4.840683e-14
5	8142452	7948455	NM_152852	MS4A6A	0.709980	2.255961e-17	3.908903e-13	7.817806e-14
6	8142452	7927799	ENST00000298249		0.704257	5.233517e-17	9.068115e-13	1.511352e-13
7	8142452	7927786	NM_001001330	REEP3	0.699032	1.109046e-16	1.921644e-12	2.745206e-13
8	8142452	8079392	NM_001123396	CCR2	0.697668	1.345556e-16	2.331446e-12	2.914307e-13
9	8142452	7927267	NM_019054	FAM35A	0.697346	1.408298e-16	2.440157e-12	2.711286e-13
10	8142452	8142307	NM_015723	PNPLA8	0.696157	1.664995e-16	2.884937e-12	2.884937e-13
11	8142452	7931754	NM_004508	IDI1	0.690069	3.875840e-16	6.715668e-12	6.105153e-13
12	8142452	8140463	NM_006682	FGL2	0.689704	4.074387e-16	7.059691e-12	5.883076e-13
13	8142452	7976080	NM_003608	GPR65	0.687658	5.385128e-16	9.330811e-12	7.177547e-13
14	8142452	7938592	NM_032228	FAR1	0.684381	8.378225e-16	1.451695e-11	1.036925e-12
15	8142452	7971565	NM_005767	LPAR6	0.683518	9.403639e-16	1.629368e-11	1.086246e-12
16	8142452	8171481	NM_003916	AP1S2	0.682625	1.059257e-15	1.835374e-11	1.147109e-12
17	8142452	7901867	NM_003368	USP1	0.680325	1.436635e-15	2.489258e-11	1.464269e-12
18	8142452	8014066	NM_001003927	EVI2A	0.679447	1.612540e-15	2.794049e-11	1.552249e-12
19	8142452	8154178	NM_004972	JAK2	0.678173	1.905538e-15	3.301725e-11	1.737750e-12
20	8142452	8135497	NM_021994	ZNF277	0.677344	2.123460e-15	3.679320e-11	1.839660e-12
21	8142452	7929562	NM_014803	ZNF518A	0.677188	2.166925e-15	3.754631e-11	1.787920e-12
22	8142452	8135625	NM_006136	CAPZA2	0.671289	4.631511e-15	8.025019e-11	3.647736e-12
23	8142452	8045539	NM_003937	KYNU	0.670851	4.897281e-15	8.485519e-11	3.689356e-12
24	8142452	7988605	NM_004236	COPS2	0.670195	5.322308e-15	9.221963e-11	3.842485e-12
25	8142452	8093294	NM_001123041	CCR2	0.665190	9.976384e-15	1.728608e-10	6.914433e-12
26	8142452	8103508	NM_017923	MARCH1	0.658578	2.246603e-14	3.892688e-10	1.497188e-11
27	8142452	7919800	NM_004079	CTSS	0.657914	2.434768e-14	4.218723e-10	1.562490e-11
28	8142452	8020423	NM_020774	MIB1	0.654500	3.669603e-14	6.358322e-10	2.270829e-11
29	8142452	8006345	NM_001033568	RHOT1	0.654429	3.700958e-14	6.412651e-10	2.211259e-11
30	8142452	8052269	NM_001135597	CCDC88A	0.653643	4.064274e-14	7.042168e-10	2.347389e-11
31	8142452	7902308	NM_003838	FPGT	0.652382	4.720782e-14	8.179698e-10	2.638612e-11
32	8142452	8097066	NM_020961	METTL14	0.650115	6.168040e-14	1.068736e-9	3.339801e-11
33	8142452	8051707	NM_003618	MAP4K3	0.649409	6.700465e-14	1.160990e-9	3.518150e-11
34	8142452	8069553	NM_003489	NRIP1	0.648935	7.082366e-14	1.227162e-9	3.609299e-11
35	8142452	8171041	NM_005638	VAMP7	0.648607	7.359610e-14	1.275200e-9	3.643427e-11
36	8142452	8176962	NM_005638	VAMP7	0.648607	7.359610e-14	1.275200e-9	3.542221e-11
37	8142452	7902166	NM_020948	MIER1	0.644362	1.203531e-13	2.085359e-9	5.636104e-11
38	8142452	8103415	NM_001128424	FAM198B	0.644093	1.241421e-13	2.151010e-9	5.660551e-11
39	8142452	8133876	NM_001001548	CD36	0.641729	1.626660e-13	2.818514e-9	7.226958e-11
40	8142452	8157021	NM_015469	NIPSNAP3A	0.641541	1.661996e-13	2.879741e-9	7.199353e-11
41	8142452	8017210	NM_003916	AP1S2	0.640820	1.803930e-13	3.125670e-9	7.623586e-11
42	8142452	8131975	NM_006024	TAX1BP1	0.640494	1.871794e-13	3.243257e-9	7.722040e-11
43	8142452	7978776	NM_018353	C14orf106	0.640018	1.975398e-13	3.422772e-9	7.959934e-11
44	8142452	7903908	NM_006090	CEPT1	0.639912	1.999363e-13	3.464297e-9	7.873402e-11
45	8142452	8155849	NM_000700	ANXA1	0.636488	2.937822e-13	5.090363e-9	1.131192e-10
46	8142452	7979260	NM_004124	GMFB	0.636038	3.089217e-13	5.352686e-9	1.163627e-10
47	8142452	7958216	NM_015275	KIAA1033	0.636022	3.094772e-13	5.362311e-9	1.140917e-10
48	8142452	7995258	NM_003414	ZNF267	0.634726	3.574602e-13	6.193713e-9	1.290357e-10
49	8142452	7989885	NM_001031723	DNAJB14	0.634032	3.860560e-13	6.689192e-9	1.365141e-10
50	8142452	8083757	NM_015938	NMD3	0.633699	4.005542e-13	6.940403e-9	1.388081e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation