[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5341	8083757	NM_015938	NMD3		NMD3 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 5341.
Getting list of p-values for id 5341.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8083757	8128592	NM_004849	ATG5	0.821347	7.357065e-27	1.274759e-22	1.274759e-22
2	8083757	7916969	NM_005455	ZRANB2	0.810838	1.049931e-25	1.819215e-21	9.096075e-22
3	8083757	7988605	NM_004236	COPS2	0.808949	1.663524e-25	2.882388e-21	9.607961e-22
4	8083757	7929562	NM_014803	ZNF518A	0.805281	4.008126e-25	6.944880e-21	1.736220e-21
5	8083757	8128429	NM_005190	CCNC	0.803393	6.255999e-25	1.083977e-20	2.167954e-21
6	8083757	8020068	NM_015208	ANKRD12	0.802927	6.977478e-25	1.208988e-20	2.014979e-21
7	8083757	7902367	NM_000016	ACADM	0.801398	9.962808e-25	1.726256e-20	2.466080e-21
8	8083757	7927267	NM_019054	FAM35A	0.800723	1.164753e-24	2.018167e-20	2.522709e-21
9	8083757	7917604	NM_201269	ZNF644	0.800217	1.308978e-24	2.268067e-20	2.520074e-21
10	8083757	7950544	NM_004705	PRKRIR	0.800006	1.374144e-24	2.380979e-20	2.380979e-21
11	8083757	8078270	NM_002948	RPL15	0.798453	1.961447e-24	3.398599e-20	3.089636e-21
12	8083757	7989885	NM_001031723	DNAJB14	0.795328	3.976581e-24	6.890222e-20	5.741852e-21
13	8083757	8137240	NM_153236	GIMAP7	0.791862	8.582859e-24	1.487152e-19	1.143963e-20
14	8083757	7933047	NM_003591	CUL2	0.786850	2.546372e-23	4.412099e-19	3.151500e-20
15	8083757	7898910	NM_017761	PNRC2	0.784130	4.538443e-23	7.863760e-19	5.242507e-20
16	8083757	8039933	NM_017761	PNRC2	0.784130	4.538443e-23	7.863760e-19	4.914850e-20
17	8083757	7902166	NM_020948	MIER1	0.784035	4.630081e-23	8.022541e-19	4.719142e-20
18	8083757	8114193	NM_001033503	SAR1B	0.783341	5.358231e-23	9.284207e-19	5.157893e-20
19	8083757	8052307	NM_001122964	SMEK2	0.783261	5.448525e-23	9.440658e-19	4.968768e-20
20	8083757	8142307	NM_015723	PNPLA8	0.782804	5.996714e-23	1.039051e-18	5.195253e-20
21	8083757	7957186	NM_022771	TBC1D15	0.782527	6.354928e-23	1.101118e-18	5.243420e-20
22	8083757	8022473	NM_052911	ESCO1	0.781233	8.322226e-23	1.441992e-18	6.554509e-20
23	8083757	7930422	NM_005445	SMC3	0.780643	9.406129e-23	1.629800e-18	7.086087e-20
24	8083757	8121031	NM_006416	SLC35A1	0.778253	1.538366e-22	2.665526e-18	1.110636e-19
25	8083757	7934870	NM_032810	ATAD1	0.778191	1.558045e-22	2.699624e-18	1.079850e-19
26	8083757	8101013	NM_015436	RCHY1	0.776849	2.047919e-22	3.548429e-18	1.364780e-19
27	8083757	8097480	NM_057175	NAA15	0.776704	2.109192e-22	3.654597e-18	1.353554e-19
28	8083757	7901867	NM_003368	USP1	0.774265	3.448576e-22	5.975348e-18	2.134053e-19
29	8083757	8127943	NM_153816	SNX14	0.773503	4.016481e-22	6.959357e-18	2.399778e-19
30	8083757	8068062	NM_006447	USP16	0.773495	4.022686e-22	6.970109e-18	2.323370e-19
31	8083757	8107613	NM_003100	SNX2	0.772394	5.008109e-22	8.677550e-18	2.799210e-19
32	8083757	8105353	NM_015360	SKIV2L2	0.771310	6.207167e-22	1.075516e-17	3.360987e-19
33	8083757	8069711	NM_015565	RNF160	0.771279	6.244601e-22	1.082002e-17	3.278794e-19
34	8083757	8036813	NM_001005851	ZNF780B	0.770757	6.921318e-22	1.199257e-17	3.527226e-19
35	8083757	7956910	NM_018448	CAND1	0.769616	8.657915e-22	1.500157e-17	4.286163e-19
36	8083757	8042270	NM_001001521	UGP2	0.768976	9.811805e-22	1.700091e-17	4.722476e-19
37	8083757	7902594	NM_182948	PRKACB	0.767998	1.186846e-21	2.056448e-17	5.557969e-19
38	8083757	8096463	NM_001128429	SMARCAD1	0.767727	1.251044e-21	2.167684e-17	5.704433e-19
39	8083757	7902634	NM_025065	RPF1	0.767680	1.262363e-21	2.187296e-17	5.608451e-19
40	8083757	8135688	NM_016200	NAA38	0.766318	1.642429e-21	2.845837e-17	7.114593e-19
41	8083757	8113157	NM_014639	TTC37	0.765191	2.038817e-21	3.532657e-17	8.616238e-19
42	8083757	7962013	NM_016570	ERGIC2	0.764341	2.398540e-21	4.155950e-17	9.895120e-19
43	8083757	8155770	NM_015110	SMC5	0.763392	2.872581e-21	4.977322e-17	1.157517e-18
44	8083757	8103289	NM_002669	PLRG1	0.763278	2.935293e-21	5.085983e-17	1.155905e-18
45	8083757	8055913	NM_017892	PRPF40A	0.762231	3.578637e-21	6.200705e-17	1.377934e-18
46	8083757	7903908	NM_006090	CEPT1	0.761710	3.947299e-21	6.839485e-17	1.486844e-18
47	8083757	7935320	NM_020123	TM9SF3	0.761490	4.114074e-21	7.128457e-17	1.516693e-18
48	8083757	8140942	NM_001040057	FAM133B	0.761159	4.377854e-21	7.585507e-17	1.580314e-18
49	8083757	8120382	NM_001031623	ZNF451	0.760975	4.531638e-21	7.851970e-17	1.602443e-18
50	8083757	8113023	NM_153354	TMEM161B	0.760864	4.626799e-21	8.016855e-17	1.603371e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation