[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4035	7970455	NM_015974	CRYL1		crystallin, lambda 1

Fetching correlation data, please wait...
Getting list of correlations for id 4035.
Getting list of p-values for id 4035.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7970455	8053187	NM_032673	PCGF1	0.548435	1.392452e-9	2.412702e-5	2.412702e-5
2	7970455	7964522	NM_000075	CDK4	0.529223	6.471431e-9	1.121305e-4	5.606524e-5
3	7970455	8159249	NM_016034	MRPS2	0.512245	2.327862e-8	4.033486e-4	1.344495e-4
4	7970455	8137225	NM_013400	REPIN1	0.508130	3.142091e-8	5.444301e-4	1.361075e-4
5	7970455	8141517	BC026269	C7orf47	0.506778	3.464239e-8	6.002486e-4	1.200497e-4
6	7970455	8037847	NM_004069	AP2S1	0.504005	4.227013e-8	7.324146e-4	1.220691e-4
7	7970455	7996919	NM_013245	VPS4A	0.494383	8.318539e-8	1.441353e-3	2.059076e-4
8	7970455	8025788	NM_001128849	SMARCA4	0.485471	1.528996e-7	2.649291e-3	3.311614e-4
9	7970455	8115927	NM_014901	RNF44	0.482903	1.816246e-7	3.147010e-3	3.496678e-4
10	7970455	7949172	NM_004579	MAP4K2	0.479876	2.221035e-7	3.848387e-3	3.848387e-4
11	7970455	8059672	ENST00000412556		0.479427	2.288029e-7	3.964468e-3	3.604062e-4
12	7970455	8005994	NM_005702	ERAL1	0.477778	2.550573e-7	4.419377e-3	3.682814e-4
13	7970455	8074003	NM_025204	TRABD	0.475361	2.987732e-7	5.176843e-3	3.982187e-4
14	7970455	8019263	NM_004309	ARHGDIA	0.473093	3.462035e-7	5.998669e-3	4.284763e-4
15	7970455	7967202	NM_019034	RHOF	0.471638	3.803270e-7	6.589926e-3	4.393284e-4
16	7970455	7950128	NM_014042	C11orf51	0.471541	3.826987e-7	6.631021e-3	4.144388e-4
17	7970455	8148728	NM_001916	CYC1	0.470948	3.975867e-7	6.888985e-3	4.052344e-4
18	7970455	7911359	NM_015658	NOC2L	0.469414	4.386939e-7	7.601249e-3	4.222916e-4
19	7970455	7973458	NM_198083	DHRS4L2	0.468232	4.731083e-7	8.197548e-3	4.314499e-4
20	7970455	7899870	NM_152493	ZNF362	0.467950	4.816897e-7	8.346238e-3	4.173119e-4
21	7970455	8037579	NM_202001	ERCC1	0.461166	7.385689e-7	1.279718e-2	6.093897e-4
22	7970455	8129937	NM_006079	CITED2	0.461089	7.421154e-7	1.285863e-2	5.844833e-4
23	7970455	7994541	NM_014387	LAT	0.460108	7.888236e-7	1.366795e-2	5.942586e-4
24	7970455	8130003	NM_031287	SF3B5	0.459280	8.304244e-7	1.438876e-2	5.995318e-4
25	7970455	7941136	NM_013265	C11orf2	0.459014	8.442114e-7	1.462765e-2	5.851060e-4
26	7970455	8158406	NM_018201	TBC1D13	0.457533	9.250574e-7	1.602847e-2	6.164796e-4
27	7970455	7899043	NM_020451	SEPN1	0.457201	9.442185e-7	1.636047e-2	6.059435e-4
28	7970455	8027805	NM_003367	USF2	0.456061	1.012698e-6	1.754701e-2	6.266790e-4
29	7970455	8024572	NM_002068	GNA15	0.455897	1.022943e-6	1.772453e-2	6.111906e-4
30	7970455	8143714	NM_015694	ZNF777	0.455821	1.027733e-6	1.780753e-2	5.935843e-4
31	7970455	8045182	NM_014369	PTPN18	0.455231	1.065492e-6	1.846177e-2	5.955410e-4
32	7970455	8037389	NM_019108	C19orf61	0.452760	1.238650e-6	2.146209e-2	6.706902e-4
33	7970455	8019765	NM_004309	ARHGDIA	0.452513	1.257335e-6	2.178585e-2	6.601773e-4
34	7970455	8125373	NM_022107	GPSM3	0.451391	1.345718e-6	2.331726e-2	6.858018e-4
35	7970455	8179987	NM_022107	GPSM3	0.451391	1.345718e-6	2.331726e-2	6.662074e-4
36	7970455	8071136	NM_001127649	PEX26	0.449443	1.513302e-6	2.622098e-2	7.283605e-4
37	7970455	7973448	NM_021004	DHRS4	0.449086	1.546078e-6	2.678889e-2	7.240241e-4
38	7970455	8062286	BC019311	C20orf4	0.447574	1.692456e-6	2.932518e-2	7.717153e-4
39	7970455	8001924	NR_024525	FAM96B	0.447272	1.723282e-6	2.985930e-2	7.656231e-4
40	7970455	7968789	NM_014059	C13orf15	0.446526	1.801532e-6	3.121515e-2	7.803787e-4
41	7970455	8019376	NM_022156	DUS1L	0.445479	1.917169e-6	3.321879e-2	8.102145e-4
42	7970455	8031536	NM_007279	U2AF2	0.445350	1.931866e-6	3.347344e-2	7.969866e-4
43	7970455	7945349	NM_016526	BET1L	0.445091	1.961804e-6	3.399218e-2	7.905158e-4
44	7970455	8031097	NM_004542	NDUFA3	0.439529	2.719384e-6	4.711876e-2	1.070881e-3
45	7970455	7943288	NM_032102	SRSF8	0.438933	2.815229e-6	4.877947e-2	1.083988e-3
46	7970455	8041826	NM_020458	TTC7A	0.438664	2.859553e-6	4.954748e-2	1.077119e-3
47	7970455	8010848	NM_005993	TBCD	0.436969	3.154370e-6	5.465578e-2	1.162889e-3
48	7970455	7941460	NM_006442	DRAP1	0.435762	3.381460e-6	5.859056e-2	1.220637e-3
49	7970455	8132964	NM_015411	SUMF2	0.435609	3.411502e-6	5.911110e-2	1.206349e-3
50	7970455	7900857	NM_174963	ST3GAL3	0.434509	3.633571e-6	6.295889e-2	1.259178e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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