[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6261	8002121	NM_001907	CTRL		chymotrypsin-like

Fetching correlation data, please wait...
Getting list of correlations for id 6261.
Getting list of p-values for id 6261.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8002121	7957540	NM_014050	MRPL42	-0.618866	1.978439e-12	3.428042e-8	3.428042e-8
2	8002121	8076511	NM_000969	RPL5	-0.596025	1.976095e-11	3.423980e-7	1.711990e-7
3	8002121	8140129	NR_026912	ABHD11	0.579201	9.619727e-11	1.666810e-6	5.556033e-7
4	8002121	8059319	NM_005687	FARSB	-0.573944	1.548892e-10	2.683766e-6	6.709414e-7
5	8002121	8109697	NM_004060	CCNG1	-0.565241	3.346311e-10	5.798153e-6	1.159631e-6
6	8002121	8106181	NM_001037637	BTF3	-0.563887	3.764671e-10	6.523046e-6	1.087174e-6
7	8002121	7961208	NM_018048	MAGOHB	-0.561950	4.451859e-10	7.713737e-6	1.101962e-6
8	8002121	7992568	NM_004424	E4F1	0.561336	4.694005e-10	8.133302e-6	1.016663e-6
9	8002121	7901895	NM_032852	ATG4C	-0.558326	6.074884e-10	1.052595e-5	1.169550e-6
10	8002121	7928354	NM_173348	FAM149B1	-0.557178	6.698029e-10	1.160568e-5	1.160568e-6
11	8002121	8129410	NM_001010923	THEMIS	-0.556641	7.010177e-10	1.214653e-5	1.104230e-6
12	8002121	7971563	NM_020357	PCNP	-0.555547	7.689902e-10	1.332429e-5	1.110358e-6
13	8002121	7933290	NR_003611	BMS1P5	-0.553764	8.936169e-10	1.548370e-5	1.191054e-6
14	8002121	7923798	NM_022731	NUCKS1	-0.551847	1.049114e-9	1.817801e-5	1.298429e-6
15	8002121	7969177	NR_002183	ST13P4	-0.551028	1.123203e-9	1.946174e-5	1.297449e-6
16	8002121	8078270	NM_002948	RPL15	-0.545264	1.806425e-9	3.129992e-5	1.956245e-6
17	8002121	7975224	NM_004094	EIF2S1	-0.544598	1.907193e-9	3.304594e-5	1.943879e-6
18	8002121	7986765	NM_000969	RPL5	-0.543912	2.016730e-9	3.494388e-5	1.941327e-6
19	8002121	8078600	NM_006756	TCEA1	-0.541757	2.401400e-9	4.160906e-5	2.189950e-6
20	8002121	8057034	NM_003690	PRKRA	-0.541058	2.540544e-9	4.402000e-5	2.201000e-6
21	8002121	7980891	NM_001128596	TC2N	-0.540965	2.559701e-9	4.435193e-5	2.111997e-6
22	8002121	8088219	NM_001112736	C3orf63	-0.540486	2.660226e-9	4.609373e-5	2.095169e-6
23	8002121	8036813	NM_001005851	ZNF780B	-0.540418	2.674944e-9	4.634876e-5	2.015164e-6
24	8002121	7901418	NM_152265	BTF3L4	-0.540413	2.675908e-9	4.636546e-5	1.931894e-6
25	8002121	8033789	NM_001008727	ZNF121	-0.539239	2.940296e-9	5.094650e-5	2.037860e-6
26	8002121	7901299	NM_016308	CMPK1	-0.538753	3.056820e-9	5.296552e-5	2.037136e-6
27	8002121	8161988	NM_013438	UBQLN1	-0.537766	3.307248e-9	5.730469e-5	2.122396e-6
28	8002121	8076272	NM_003932	ST13	-0.537741	3.313845e-9	5.741899e-5	2.050678e-6
29	8002121	7917148	NM_022831	AIDA	-0.535741	3.884217e-9	6.730183e-5	2.320753e-6
30	8002121	8018288	NM_006356	ATP5H	-0.534255	4.367745e-9	7.567992e-5	2.522664e-6
31	8002121	7958396	NM_203436	ASCL4	0.533652	4.580191e-9	7.936096e-5	2.560031e-6
32	8002121	7931187	NM_004725	BUB3	-0.533245	4.728859e-9	8.193694e-5	2.560529e-6
33	8002121	7927955	NM_015634	KIAA1279	-0.532789	4.900976e-9	8.491921e-5	2.573309e-6
34	8002121	7906852	NM_175866	UHMK1	-0.532157	5.149644e-9	8.922789e-5	2.624350e-6
35	8002121	7944185	NM_000073	CD3G	-0.531187	5.555331e-9	9.625722e-5	2.750206e-6
36	8002121	8112892	CR608596	LOC644037	-0.531086	5.599184e-9	9.701707e-5	2.694919e-6
37	8002121	8095574	NM_000788	DCK	-0.530941	5.662882e-9	9.812076e-5	2.651912e-6
38	8002121	7931081	NM_021622	PLEKHA1	-0.529720	6.226869e-9	1.078930e-4	2.839288e-6
39	8002121	7903281	NM_012243	SLC35A3	-0.529033	6.567537e-9	1.137957e-4	2.917839e-6
40	8002121	8035703	NM_004720	LPAR2	0.527915	7.160318e-9	1.240668e-4	3.101671e-6
41	8002121	7942417	NM_014786	ARHGEF17	0.526002	8.295544e-9	1.437369e-4	3.505778e-6
42	8002121	7917359	NM_017953	ZNHIT6	-0.525822	8.410907e-9	1.457358e-4	3.469900e-6
43	8002121	7954613	NM_018318	CCDC91	-0.525101	8.887646e-9	1.539962e-4	3.581308e-6
44	8002121	7956018	NM_002905	RDH5	0.524788	9.102896e-9	1.577259e-4	3.584679e-6
45	8002121	8047641	NM_177538	CYP20A1	-0.524428	9.356493e-9	1.621199e-4	3.602666e-6
46	8002121	7994981	NM_152288	ORAI3	0.524234	9.496519e-9	1.645462e-4	3.577091e-6
47	8002121	8156750	NM_006401	ANP32B	-0.523900	9.740640e-9	1.687761e-4	3.590980e-6
48	8002121	7911989	NM_000983	RPL22	-0.523564	9.993431e-9	1.731562e-4	3.607421e-6
49	8002121	8028227	NM_152604	ZNF383	-0.523475	1.006121e-8	1.743306e-4	3.557767e-6
50	8002121	7947138	NM_022725	FANCF	-0.523436	1.009135e-8	1.748529e-4	3.497057e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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