[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6946 7997810 NM_001012759 CTU2 link to infopage cytosolic thiouridylase subunit 2 homolog (S. pombe)

Fetching correlation data, please wait...
Getting list of correlations for id 6946.
Getting list of p-values for id 6946.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7997810 8076747 AK123383 LOC642648 link to infopage 0.757559 8.553297e-21 1.482030e-16 1.482030e-16
2 7997810 8007259 ENST00000225928 link to infopage 0.749450 3.707068e-20 6.423237e-16 3.211618e-16
3 7997810 7962703 NM_001844 COL2A1 link to infopage 0.748289 4.552288e-20 7.887750e-16 2.629250e-16
4 7997810 8153322 NM_015193 ARC link to infopage 0.747197 5.517464e-20 9.560110e-16 2.390027e-16
5 7997810 7998351 NM_001025190 MSLNL link to infopage 0.742451 1.257512e-19 2.178891e-15 4.357782e-16
6 7997810 7946354 NM_002315 LMO1 link to infopage 0.738563 2.437122e-19 4.222802e-15 7.038004e-16
7 7997810 8074558 NM_023004 RTN4R link to infopage 0.738474 2.473995e-19 4.286692e-15 6.123845e-16
8 7997810 8024048 NM_002777 PRTN3 link to infopage 0.737088 3.123291e-19 5.411726e-15 6.764658e-16
9 7997810 7966189 NM_213596 FOXN4 link to infopage 0.735269 4.230373e-19 7.329967e-15 8.144408e-16
10 7997810 7911506 NM_004421 DVL1 link to infopage 0.731223 8.236765e-19 1.427184e-14 1.427184e-15
11 7997810 8162472 NM_021570 BARX1 link to infopage 0.730212 9.709916e-19 1.682437e-14 1.529488e-15
12 7997810 8032699 NM_015174 ZFR2 link to infopage 0.728850 1.210809e-18 2.097969e-14 1.748308e-15
13 7997810 8153101 NM_152888 COL22A1 link to infopage 0.727590 1.483060e-18 2.569699e-14 1.976691e-15
14 7997810 7947928 NM_031909 C1QTNF4 link to infopage 0.726980 1.635343e-18 2.833558e-14 2.023970e-15
15 7997810 8075934 NM_014550 CARD10 link to infopage 0.726848 1.670308e-18 2.894143e-14 1.929428e-15
16 7997810 8027556 NM_002333 LRP3 link to infopage 0.725839 1.962326e-18 3.400122e-14 2.125076e-15
17 7997810 7923372 NM_012396 PHLDA3 link to infopage 0.725417 2.098697e-18 3.636412e-14 2.139066e-15
18 7997810 8027920 NM_014209 ETV2 link to infopage 0.724802 2.314090e-18 4.009624e-14 2.227569e-15
19 7997810 8032094 NM_024888 LPPR3 link to infopage 0.724567 2.402146e-18 4.162199e-14 2.190631e-15
20 7997810 8159670 NM_006647 NOXA1 link to infopage 0.724555 2.406539e-18 4.169810e-14 2.084905e-15
21 7997810 8094960 NM_152679 SLC10A4 link to infopage 0.724253 2.524539e-18 4.374268e-14 2.082985e-15
22 7997810 8142971 NM_138693 KLF14 link to infopage 0.724109 2.582755e-18 4.475140e-14 2.034154e-15
23 7997810 7981447 NM_001100119 XRCC3 link to infopage 0.722345 3.409568e-18 5.907758e-14 2.568591e-15
24 7997810 8005726 NM_021012 KCNJ12 link to infopage 0.722269 3.450817e-18 5.979231e-14 2.491346e-15
25 7997810 7897006 NM_006983 MMP23B link to infopage 0.722127 3.528258e-18 6.113412e-14 2.445365e-15
26 7997810 8137133 NM_032534 KRBA1 link to infopage 0.720724 4.393777e-18 7.613098e-14 2.928114e-15
27 7997810 7992447 NM_004209 SYNGR3 link to infopage 0.720556 4.509974e-18 7.814431e-14 2.894234e-15
28 7997810 8138757 NM_018951 HOXA10 link to infopage 0.719026 5.718831e-18 9.909019e-14 3.538935e-15
29 7997810 8027213 NM_198537 YJEFN3 link to infopage 0.717306 7.453970e-18 1.291549e-13 4.453619e-15
30 7997810 8086985 NM_000094 COL7A1 link to infopage 0.717148 7.637403e-18 1.323333e-13 4.411110e-15
31 7997810 7912031 NM_019089 HES2 link to infopage 0.715996 9.109521e-18 1.578407e-13 5.091634e-15
32 7997810 8007895 NM_003396 WNT9B link to infopage 0.715925 9.208784e-18 1.595606e-13 4.986269e-15
33 7997810 7998910 NM_001103175 CCDC64B link to infopage 0.715846 9.320099e-18 1.614893e-13 4.893617e-15
34 7997810 7980352 NM_021257 NGB link to infopage 0.715586 9.697508e-18 1.680287e-13 4.942021e-15
35 7997810 8153704 NM_031309 SCRT1 link to infopage 0.715467 9.874789e-18 1.711005e-13 4.888585e-15
36 7997810 8038362 NM_178449 PTH2 link to infopage 0.715461 9.884483e-18 1.712684e-13 4.757456e-15
37 7997810 8051949 NM_016932 SIX2 link to infopage 0.714930 1.071507e-17 1.856601e-13 5.017840e-15
38 7997810 7994260 NM_006040 HS3ST4 link to infopage 0.714822 1.089311e-17 1.887449e-13 4.966970e-15
39 7997810 8012344 NM_032580 HES7 link to infopage 0.714017 1.230780e-17 2.132572e-13 5.468134e-15
40 7997810 8006865 NM_032192 PPP1R1B link to infopage 0.713803 1.271254e-17 2.202701e-13 5.506753e-15
41 7997810 8038109 NM_017708 FAM83E link to infopage 0.713357 1.359775e-17 2.356082e-13 5.746541e-15
42 7997810 7912706 NM_004431 EPHA2 link to infopage 0.713072 1.419610e-17 2.459759e-13 5.856569e-15
43 7997810 7919299 AK128227 LOC100130236 link to infopage 0.713028 1.428993e-17 2.476015e-13 5.758175e-15
44 7997810 7919380 AK128227 LOC100130236 link to infopage 0.713028 1.428993e-17 2.476015e-13 5.627308e-15
45 7997810 7949033 NM_014067 MACROD1 link to infopage 0.712452 1.558572e-17 2.700538e-13 6.001196e-15
46 7997810 7992049 NM_207112 HAGHL link to infopage 0.711229 1.872326e-17 3.244178e-13 7.052562e-15
47 7997810 8053022 NM_001965 EGR4 link to infopage 0.711125 1.901767e-17 3.295192e-13 7.011047e-15
48 7997810 8170562 NM_175742 MAGEA2 link to infopage 0.710828 1.987962e-17 3.444542e-13 7.176130e-15
49 7997810 8086683 NM_182702 PRSS42 link to infopage 0.710402 2.118385e-17 3.670526e-13 7.490870e-15
50 7997810 8038093 NM_001080434 LMTK3 link to infopage 0.710050 2.232469e-17 3.868198e-13 7.736396e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Valid XHTML 1.0 Transitional Valid CSS!