[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6651	7990379	NM_001142443	EDC3		enhancer of mRNA decapping 3 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 6651.
Getting list of p-values for id 6651.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7990379	8010949	NM_016080	GLOD4	0.687607	5.423003e-16	9.396437e-12	9.396437e-12
2	7990379	8105181	NM_016640	MRPS30	0.686499	6.300638e-16	1.091712e-11	5.458558e-12
3	7990379	7989834	AK296134	C15orf44	0.655676	3.187681e-14	5.523295e-10	1.841098e-10
4	7990379	8109368	NM_005754	G3BP1	0.653248	4.259924e-14	7.381170e-10	1.845293e-10
5	7990379	8036333	NM_020951	ZNF529	0.638825	2.260368e-13	3.916539e-9	7.833079e-10
6	7990379	8018600	NM_014230	SRP68	0.627242	8.112175e-13	1.405597e-8	2.342661e-9
7	7990379	8014891	NM_012481	IKZF3	0.620787	1.616322e-12	2.800602e-8	4.000860e-9
8	7990379	8145586	NM_018091	ELP3	0.615386	2.843073e-12	4.926193e-8	6.157741e-9
9	7990379	8111629	NM_153485	NUP155	0.614815	3.016165e-12	5.226108e-8	5.806787e-9
10	7990379	8107750	NM_130809	PRRC1	0.613366	3.502061e-12	6.068022e-8	6.068022e-9
11	7990379	8162313	NM_013417	IARS	0.612093	3.990803e-12	6.914864e-8	6.286240e-9
12	7990379	8114396	NM_004661	CDC23	0.610642	4.627985e-12	8.018909e-8	6.682425e-9
13	7990379	7908732	NM_018085	IPO9	0.610604	4.645851e-12	8.049866e-8	6.192205e-9
14	7990379	8142912	NM_032842	TMEM209	0.610273	4.805334e-12	8.326202e-8	5.947287e-9
15	7990379	7974835	NM_006255	PRKCH	0.608438	5.787877e-12	1.002865e-7	6.685770e-9
16	7990379	7981919	NM_022807	SNRPN	0.607985	6.059047e-12	1.049851e-7	6.561569e-9
17	7990379	7981032	NM_020414	DDX24	0.607447	6.396780e-12	1.108370e-7	6.519824e-9
18	7990379	8054437	NM_022662	ANAPC1	0.607181	6.570037e-12	1.138390e-7	6.324391e-9
19	7990379	8170971	NM_001363	DKC1	0.606192	7.256241e-12	1.257289e-7	6.617310e-9
20	7990379	7970473	NM_022459	XPO4	0.605878	7.488365e-12	1.297509e-7	6.487545e-9
21	7990379	8114455	NM_004134	HSPA9	0.605539	7.746667e-12	1.342265e-7	6.391738e-9
22	7990379	7903878	NM_022768	RBM15	0.605524	7.758797e-12	1.344367e-7	6.110758e-9
23	7990379	8017283	NR_026641	INTS2	0.604433	8.651848e-12	1.499106e-7	6.517851e-9
24	7990379	8068902	NM_015056	RRP1B	0.604398	8.681718e-12	1.504281e-7	6.267839e-9
25	7990379	8128572	NM_002726	PREP	0.603295	9.688609e-12	1.678745e-7	6.714981e-9
26	7990379	7935951	NM_024541	C10orf76	0.602881	1.009505e-11	1.749169e-7	6.727572e-9
27	7990379	8020254	NM_031216	SEH1L	0.602222	1.077536e-11	1.867046e-7	6.914985e-9
28	7990379	8136614	NM_018238	AGK	0.601353	1.174142e-11	2.034436e-7	7.265844e-9
29	7990379	7899774	NM_004964	HDAC1	0.600932	1.223849e-11	2.120562e-7	7.312284e-9
30	7990379	7910752	NM_000254	MTR	0.600577	1.267342e-11	2.195923e-7	7.319743e-9
31	7990379	8177601	NM_022132	MCCC2	0.600011	1.339751e-11	2.321387e-7	7.488346e-9
32	7990379	8106068	NM_022132	MCCC2	0.600011	1.339751e-11	2.321387e-7	7.254335e-9
33	7990379	8070102	NM_000819	GART	0.599719	1.378697e-11	2.388868e-7	7.238994e-9
34	7990379	8115234	NM_001155	ANXA6	0.598995	1.480068e-11	2.564514e-7	7.542687e-9
35	7990379	8163023	NM_003640	IKBKAP	0.598657	1.529794e-11	2.650674e-7	7.573355e-9
36	7990379	8056766	NM_003705	SLC25A12	0.598506	1.552510e-11	2.690034e-7	7.472316e-9
37	7990379	7994102	NM_032486	DCTN5	0.598354	1.575691e-11	2.730200e-7	7.378919e-9
38	7990379	7914764	NM_007167	ZMYM6	0.596845	1.824924e-11	3.162045e-7	8.321171e-9
39	7990379	8120860	NM_183050	BCKDHB	0.595618	2.055380e-11	3.561357e-7	9.131685e-9
40	7990379	8145782	NM_032509	MAK16	0.595285	2.122497e-11	3.677651e-7	9.194128e-9
41	7990379	7967386	NM_022782	MPHOSPH9	0.594847	2.214260e-11	3.836648e-7	9.357678e-9
42	7990379	8130505	NM_003379	EZR	0.594675	2.251298e-11	3.900824e-7	9.287677e-9
43	7990379	8007904	NM_004287	GOSR2	0.594173	2.362605e-11	4.093685e-7	9.520199e-9
44	7990379	8123695	NM_206836	PECI	0.593886	2.428814e-11	4.208405e-7	9.564558e-9
45	7990379	8006715	NM_001488	TADA2A	0.593666	2.480712e-11	4.298330e-7	9.551844e-9
46	7990379	8104422	NM_002454	MTRR	0.593259	2.579572e-11	4.469624e-7	9.716575e-9
47	7990379	8112892	CR608596	LOC644037	0.592400	2.800727e-11	4.852819e-7	1.032515e-8
48	7990379	8129181	NM_020399	GOPC	0.591696	2.995290e-11	5.189939e-7	1.081237e-8
49	7990379	7925823	NM_012341	GTPBP4	0.590956	3.214228e-11	5.569292e-7	1.136590e-8
50	7990379	8141490	NR_003613	PMS2L1	0.590603	3.324010e-11	5.759513e-7	1.151903e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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